Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.4e-212 741.9 376 100.0
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.1e-187 659.1 374 89.6
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.9e-180 636.0 375 88.0
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 3.3e-169 598.6 373 82.3
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 2.0e-166 589.3 378 81.7
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.7e-165 586.3 376 80.6
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.8e-159 566.2 373 79.4
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 9.1e-159 563.9 380 79.2
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.8e-154 549.7 379 76.5
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.4e-151 540.0 377 76.4
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 3.1e-151 538.9 377 76.4
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 1.2e-145 520.4 371 71.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.3e-141 506.9 357 72.8
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.9e-141 505.4 299 82.3
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 5.0e-141 505.0 330 76.1
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 8.6e-141 504.2 369 70.5
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.1e-140 503.8 357 71.4
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 3.3e-140 502.3 364 69.8
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.8e-139 499.2 378 68.3
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 6.1e-139 498.0 299 80.6
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 1.0e-138 497.3 367 69.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.4e-138 496.9 369 68.6
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.4e-138 496.9 369 69.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.5e-137 493.4 365 69.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 5.8e-137 491.5 341 72.4
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.5e-137 491.1 366 70.2
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.3e-136 490.3 387 68.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.9e-136 489.2 312 77.6
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.7e-136 488.8 322 75.2
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 4.9e-136 488.4 363 69.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.9e-136 488.4 342 71.3
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 4.9e-136 488.4 342 71.3
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 8.3e-136 487.6 365 69.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.2e-135 485.7 365 69.0
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 4.1e-135 485.3 298 78.5
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.6e-134 481.9 371 67.4
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.6e-134 481.9 370 67.3
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.3e-133 479.6 367 65.9
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.0e-133 479.2 302 77.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.0e-133 479.2 344 70.3
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 3.9e-133 478.8 304 75.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 6.6e-133 478.0 311 73.0
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.1e-132 477.2 330 72.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.9e-132 476.5 371 66.8
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.1e-131 473.0 312 74.4
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.1e-131 473.0 367 65.4
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.1e-131 473.0 341 69.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.7e-131 471.9 382 64.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.1e-131 471.1 302 74.8
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.4e-130 470.3 304 75.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.8e-130 469.9 323 70.9
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 3.1e-130 469.2 286 80.1
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 3.1e-130 469.2 304 75.0
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 3.4e-129 465.7 304 75.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.4e-129 465.3 352 65.9
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 7.5e-129 464.5 318 71.1
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 7.5e-129 464.5 302 74.2
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-128 463.4 301 74.4
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.2e-128 463.0 349 68.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.9e-128 462.6 305 73.4
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 8.3e-128 461.1 298 75.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 8.3e-128 461.1 325 73.8
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-127 460.7 372 63.4
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.1e-127 460.7 326 69.3
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.9e-127 459.9 367 63.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.2e-127 459.1 331 69.8
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 3.2e-127 459.1 374 63.6
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 7.1e-127 458.0 322 72.4
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 9.2e-127 457.6 366 64.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 9.2e-127 457.6 360 66.4
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.6e-126 456.8 313 73.2
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 2.1e-126 456.4 378 63.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.6e-126 455.3 340 68.2
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 1.7e-125 453.4 311 70.1
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 1.7e-125 453.4 311 71.7
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 3.0e-125 452.6 371 66.6
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.9e-125 452.2 368 62.2
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 8.6e-125 451.1 376 62.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.5e-124 450.3 372 62.1
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.3e-124 449.1 430 57.4
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.0e-121 439.9 367 63.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 2.0e-121 439.9 335 66.3
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.9e-120 436.0 320 65.9
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.9e-120 435.3 377 67.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.9e-119 433.3 319 67.7
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 2.1e-118 429.9 299 68.6
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 7.8e-118 427.9 302 70.5
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.0e-117 427.6 310 69.7
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.9e-117 425.6 350 60.9
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-116 422.5 345 62.6
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.6e-113 412.9 371 59.6
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-112 409.8 248 80.2
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 4.9e-112 408.7 332 62.3
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.3e-109 399.8 274 71.2
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.3e-109 399.8 274 71.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.8e-106 390.2 306 65.7
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 1.6e-99 367.1 219 80.8
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.4e-98 364.0 294 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 9.0e-98 361.3 280 61.8
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 1.4e-95 354.0 302 58.6
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.4e-95 353.2 294 62.6
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 3.5e-94 349.4 308 56.5
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.7e-91 339.3 303 52.5
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 6.2e-91 338.6 289 58.8
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-90 337.0 299 53.5
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.4e-89 332.8 302 52.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-89 332.0 299 52.8
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-88 330.1 291 52.6
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.2e-88 330.1 230 70.0
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 6.5e-88 328.6 303 52.1
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-88 328.2 303 51.5
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 8.4e-88 328.2 303 52.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-87 326.2 290 53.1
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.2e-87 326.2 303 52.1
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 7.1e-87 325.1 302 50.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-86 324.3 297 54.2
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.2e-86 324.3 303 50.8
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-86 323.9 303 52.1
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.1e-86 323.6 297 53.5
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.9e-86 321.6 303 50.5
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 7.9e-86 321.6 302 52.0
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.8e-85 320.5 303 50.8
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.1e-85 318.9 303 52.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.9e-84 317.0 291 51.5
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.9e-84 317.0 301 51.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.5e-84 316.6 301 50.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.3e-84 315.8 311 49.8
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.7e-84 315.5 300 52.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.7e-84 315.5 303 51.2
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-84 315.1 297 51.9
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 7.4e-84 315.1 297 51.9
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.4e-84 315.1 295 49.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 9.6e-84 314.7 300 52.3
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.6e-83 313.9 304 51.6
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-83 312.4 303 50.8
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-82 311.2 304 50.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.2e-81 307.8 297 50.8
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 4.5e-81 305.8 272 52.6
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-80 304.7 304 49.0
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-78 297.0 302 49.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.1e-78 297.0 302 46.7
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 4.3e-76 289.3 302 47.4
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.7e-76 288.9 267 50.9
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 8.2e-75 285.0 235 63.0
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 9.0e-74 281.6 300 50.0
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 3.8e-72 276.2 286 49.7
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-70 271.2 279 49.8
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-67 259.6 349 39.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 5.0e-64 249.2 244 50.4
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-55 219.9 219 49.3
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 3.2e-55 219.9 298 40.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-53 214.2 204 51.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-53 214.2 204 51.5
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 4.0e-53 213.0 253 49.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 1.1e-52 211.5 189 59.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.8e-45 187.6 291 38.1
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.8e-37 161.0 127 52.8
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-35 154.8 127 51.2
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-35 154.8 127 51.2
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 4.9e-35 152.9 146 50.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.1e-34 150.2 296 32.8
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.9e-31 141.0 81 85.2
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 6.1e-30 136.0 110 50.9
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-27 126.7 157 45.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.9e-23 114.4 94 62.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 3.2e-18 97.1 298 27.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.7e-14 83.2 57 73.7


User provided reference genes

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