Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 3.8e-139 498.0 230 100.0
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 4.5e-100 368.2 229 75.1
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 1.4e-98 363.2 229 72.5
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 2.2e-83 312.8 237 62.4
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 1.1e-82 310.5 241 61.4
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 2.6e-79 299.3 241 60.6
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 7.0e-77 291.2 313 47.3
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 2.7e-76 289.3 314 46.8
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 4.5e-76 288.5 327 47.7
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 2.2e-75 286.2 302 46.7
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 2.9e-75 285.8 325 45.2
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 5.0e-75 285.0 300 47.0
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 6.5e-75 284.6 321 46.7
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.1e-74 283.9 343 45.8
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.5e-74 283.5 330 46.4
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.9e-74 283.1 329 45.3
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 2.5e-74 282.7 330 46.1
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.2e-74 282.3 292 47.6
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 4.2e-74 282.0 312 46.2
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.2e-74 281.2 297 46.5
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 9.4e-74 280.8 330 46.4
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 1.2e-73 280.4 326 44.8
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.2e-73 280.4 326 46.3
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 2.7e-73 279.3 335 44.8
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 2.7e-73 279.3 324 45.1
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 3.6e-73 278.9 326 46.9
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 3.6e-73 278.9 317 46.7
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 3.6e-73 278.9 310 47.4
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 4.7e-73 278.5 323 45.5
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 6.1e-73 278.1 335 44.5
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 8.0e-73 277.7 338 43.5
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.8e-72 276.6 331 45.0
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 2.3e-72 276.2 334 44.0
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 4.0e-72 275.4 316 44.6
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 8.8e-72 274.2 334 43.7
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 8.8e-72 274.2 321 43.6
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 8.8e-72 274.2 324 45.4
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 2.6e-71 272.7 328 45.1
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.6e-71 272.7 328 45.4
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 2.6e-71 272.7 338 44.7
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 2.6e-71 272.7 331 44.1
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 7.5e-71 271.2 337 43.9
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 7.5e-71 271.2 329 44.4
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 1.3e-70 270.4 322 45.7
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.7e-70 270.0 325 45.8
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.7e-70 270.0 297 46.1
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.2e-70 269.6 346 42.2
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 2.8e-70 269.2 334 44.3
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.7e-70 268.9 328 45.1
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 4.8e-70 268.5 323 45.2
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 6.3e-70 268.1 321 44.9
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 6.3e-70 268.1 329 43.8
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 8.3e-70 267.7 329 44.4
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 8.3e-70 267.7 322 44.7
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.1e-69 267.3 328 44.8
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 1.1e-69 267.3 346 41.6
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 1.4e-69 266.9 298 46.3
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.4e-69 266.2 328 43.9
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 3.1e-69 265.8 328 43.6
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.1e-69 265.4 328 43.9
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 4.1e-69 265.4 341 41.9
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 4.1e-69 265.4 328 44.5
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 7.0e-69 264.6 326 44.2
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 9.1e-69 264.2 328 43.9
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 1.2e-68 263.8 327 42.8
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.0e-68 263.1 328 43.0
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 2.0e-68 263.1 326 43.6
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 3.5e-68 262.3 317 43.5
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 4.5e-68 261.9 323 44.0
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 4.5e-68 261.9 326 43.3
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 5.9e-68 261.5 322 44.4
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 7.7e-68 261.2 321 43.0
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 7.7e-68 261.2 309 44.3
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 7.7e-68 261.2 319 44.8
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.0e-67 260.8 334 41.0
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.0e-67 260.8 328 43.9
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 1.7e-67 260.0 307 45.0
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 1.7e-67 260.0 307 45.0
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 8.6e-67 257.7 300 45.3
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.1e-66 257.3 339 40.4
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.9e-66 256.5 317 42.3
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 4.2e-66 255.4 333 42.0
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 5.5e-66 255.0 335 41.5
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 9.5e-66 254.2 307 46.3
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 9.5e-66 254.2 332 42.5
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.6e-65 253.4 335 40.6
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 1.6e-65 253.4 335 43.3
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 2.1e-65 253.1 324 42.6
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 3.6e-65 252.3 328 43.6
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 4.7e-65 251.9 337 41.5
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 1.4e-64 250.4 336 42.0
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 1.4e-64 250.4 337 41.5
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.8e-64 250.0 355 39.2
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.2e-63 247.3 332 41.3
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.0e-63 246.5 244 52.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.6e-63 246.1 307 43.6
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.6e-63 246.1 242 52.5
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 5.7e-63 245.0 354 38.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 3.7e-62 242.3 337 40.4
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 6.3e-62 241.5 336 40.5
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 2.0e-60 236.5 247 47.4
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 3.5e-60 235.7 270 44.8
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 6.6e-59 231.5 230 47.4
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 1.5e-58 230.3 359 37.9
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 3.3e-58 229.2 271 44.6
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 2.6e-55 219.5 262 41.2
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.3e-54 217.2 384 34.6
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 1.7e-54 216.9 147 67.3
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 2.2e-54 216.5 400 34.0
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.2e-54 216.5 392 34.7
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.9e-54 216.1 425 32.0
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.1e-53 214.2 308 41.2
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 1.9e-53 213.4 288 41.3
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 7.0e-53 211.5 400 33.8
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 2.0e-52 209.9 409 33.3
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 2.7e-52 209.5 327 37.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 1.3e-51 207.2 353 35.7
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 1.7e-51 206.8 392 31.9
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.3e-50 202.2 366 32.2
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.2e-49 200.7 130 68.5
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 9.8e-47 191.0 146 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.3e-46 190.7 423 29.8
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.7e-46 189.1 246 41.9
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.3e-42 175.6 420 28.8
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 5.6e-42 175.3 128 60.2
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.6e-41 173.7 270 37.8
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 9.9e-31 137.9 98 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 3.5e-28 129.4 125 51.2
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.5e-23 114.0 167 39.5
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 3.8e-22 109.4 101 50.5
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 7.8e-20 101.7 86 58.1
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.0e-19 101.3 86 60.5
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.3e-17 94.4 93 49.5
AUR62042565 Chenopodium quinoa HOM05D002394 ORTHO05D002508 1.9e-13 80.5 232 28.0
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 4.2e-13 79.3 232 28.0
AUR62018153 Chenopodium quinoa HOM05D002394 ORTHO05D002508 4.2e-13 79.3 232 28.0
TAR371G0698 Trochodendron aralioides HOM05D002394 ORTHO05D002508 6.0e-12 75.5 228 27.6
Potri.017G090300 Populus trichocarpa HOM05D002394 ORTHO05D002508 7.9e-12 75.1 232 27.2
Cc07_g03920 Coffea canephora HOM05D002394 ORTHO05D002508 3.0e-11 73.2 230 25.2
Ca_06809_v3 Cicer arietinum L. HOM05D002394 ORTHO05D002508 1.1e-10 71.2 227 26.4
Sabra17G0079500 Salix brachista HOM05D002394 ORTHO05D002508 1.1e-10 71.2 220 28.6
DCAR_025410 Daucus carota HOM05D002394 ORTHO05D002508 1.3e-09 67.8 214 28.5
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.3e-09 67.8 88 43.2
Duzib187G0279 Durio zibethinus HOM05D002394 ORTHO05D002508 2.1e-09 67.0 232 26.7
Ah.01g015130 Amaranthus hybridus HOM05D002394 ORTHO05D002508 8.1e-09 65.1 229 26.6
Zm00001eb020350 Zea mays HOM05D002394 ORTHO05D002508 4.0e-08 62.8 232 26.3


User provided reference genes

Program Settings