Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 4.3e-147 524.6 261 100.0
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 1.9e-126 456.1 266 88.3
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 2.7e-125 452.2 273 87.2
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 1.6e-106 389.8 269 79.9
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 3.6e-106 388.7 270 80.0
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 3.1e-105 385.6 274 78.5
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 7.9e-101 370.9 275 74.9
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 3.9e-100 368.6 271 74.2
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 1.5e-99 366.7 265 77.4
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 1.5e-99 366.7 233 83.3
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 5.8e-96 354.8 285 67.7
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 6.0e-93 344.7 273 70.3
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 3.0e-92 342.4 280 67.1
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 5.1e-92 341.7 277 68.2
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 1.5e-91 340.1 277 70.0
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 1.9e-91 339.7 283 67.8
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.1e-90 336.3 274 68.2
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 2.1e-90 336.3 275 69.8
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 3.7e-90 335.5 273 70.0
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 8.2e-90 334.3 273 69.6
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 1.4e-89 333.6 279 67.0
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.8e-89 333.2 274 69.0
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 5.0e-87 325.1 264 67.4
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 8.4e-87 324.3 281 66.9
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 1.1e-86 323.9 277 67.1
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 1.9e-86 323.2 277 67.1
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 1.9e-86 323.2 302 61.9
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 7.2e-86 321.2 281 66.2
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 2.7e-85 319.3 277 65.3
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 7.9e-85 317.8 275 68.0
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 3.9e-84 315.5 270 69.3
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 5.1e-84 315.1 269 66.2
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.9e-83 313.2 274 65.0
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.5e-83 312.8 274 65.0
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.5e-83 312.8 274 64.6
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 3.7e-82 308.9 274 64.2
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 6.9e-81 304.7 268 65.7
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 1.5e-80 303.5 276 64.5
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 4.2e-78 295.4 262 66.4
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 3.6e-77 292.4 276 63.4
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 4.6e-77 292.0 258 64.7
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 8.8e-76 287.7 273 63.7
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 3.1e-73 279.3 282 63.5
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 1.5e-72 276.9 283 58.0
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 4.5e-72 275.4 286 61.2
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 1.7e-71 273.5 283 62.2
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.2e-71 273.1 281 62.3
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.1e-70 270.8 270 61.5
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.6e-69 266.9 279 57.0
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 6.1e-69 265.0 279 59.5
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.4e-68 263.8 286 57.0
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 3.0e-68 262.7 258 60.5
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 2.0e-67 260.0 277 59.9
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 4.4e-67 258.8 286 57.0
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 3.7e-66 255.8 275 57.8
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 4.8e-66 255.4 275 57.8
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 4.8e-66 255.4 275 57.8
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 9.1e-65 251.1 277 58.8
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 2.0e-64 250.0 267 59.2
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 7.7e-64 248.1 275 59.6
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.0e-63 247.7 272 57.0
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 2.2e-63 246.5 276 59.1
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 5.0e-63 245.4 272 56.6
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 5.0e-63 245.4 200 69.5
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 8.5e-63 244.6 229 61.1
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 1.5e-62 243.8 244 62.7
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 2.5e-62 243.0 277 57.8
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 4.2e-62 242.3 287 57.1
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.2e-61 240.7 272 55.9
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 1.2e-61 240.7 269 57.2
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.2e-61 240.7 296 55.1
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.6e-61 240.4 275 57.1
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.6e-61 240.4 273 57.5
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 6.1e-61 238.4 272 56.6
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 6.1e-61 238.4 266 57.9
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 4.0e-60 235.7 276 54.3
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 6.7e-60 235.0 236 61.4
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 8.8e-60 234.6 289 54.7
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 1.1e-59 234.2 299 53.2
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 2.6e-59 233.0 301 53.5
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 4.4e-59 232.3 278 57.6
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 1.7e-58 230.3 305 51.8
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 6.3e-58 228.4 262 56.1
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 4.5e-56 222.2 286 53.1
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 3.8e-55 219.2 258 53.1
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 6.5e-55 218.4 290 51.0
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 8.5e-55 218.0 262 54.6
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 3.6e-53 212.6 278 52.2
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 1.4e-52 210.7 205 62.0
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 1.2e-51 207.6 227 59.0
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.2e-51 207.6 260 52.3
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 1.8e-49 200.3 241 54.4
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 5.4e-49 198.7 266 53.8
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 5.0e-47 192.2 249 55.0
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 2.5e-46 189.9 254 51.2
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 3.6e-45 186.0 171 67.8
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 8.8e-44 181.4 264 50.0
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 5.7e-43 178.7 211 55.0
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.6e-40 170.6 223 53.4
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 3.8e-39 166.0 275 41.5
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 8.6e-39 164.9 340 39.1
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 3.3e-38 162.9 169 63.3
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.5e-35 154.1 250 46.4
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 2.6e-35 153.3 178 57.3
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 7.0e-33 145.2 231 47.2
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 6.2e-29 132.1 107 72.0
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 6.8e-28 128.6 219 43.4
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 1.3e-26 124.4 94 70.2
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 2.2e-26 123.6 257 39.3
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 3.7e-26 122.9 244 41.4
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 8.3e-26 121.7 237 40.9
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 3.4e-19 99.8 91 63.7
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 3.2e-17 93.2 78 66.7
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 5.6e-14 82.4 219 37.0
VMungo0720G2130 Vigna mungo HOM05D002674 ORTHO05D007700 8.1e-13 78.6 37 97.3
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 1.1e-12 78.2 77 54.5
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 1.1e-12 78.2 77 54.5
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 2.3e-12 77.0 83 57.8
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 6.8e-12 75.5 67 62.7
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 1.5e-11 74.3 41 80.5
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 2.6e-11 73.6 64 62.5
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 5.8e-11 72.4 41 78.0
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 9.9e-11 71.6 39 79.5
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 9.9e-11 71.6 77 51.9
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 1.7e-10 70.9 64 60.9
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 3.8e-10 69.7 39 76.9
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 3.8e-10 69.7 39 76.9
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 1.9e-09 67.4 37 78.4
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 4.1e-09 66.2 37 78.4
Haze_04933 Corylus avellana HOM05D002674 ORTHO05D007700 7.1e-09 65.5 35 80.0
Rhsim01G0284900 Rhododendron simsii HOM05D000113 ORTHO05D008110 3.3e-06 56.6 37 73.0


User provided reference genes

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