Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 5.3e-110 401.0 194 100.0
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 5.1e-89 331.3 196 90.3
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.4e-86 322.4 194 83.5
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.6e-82 309.7 196 80.1
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 4.0e-65 251.9 192 68.8
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.8e-63 245.0 193 67.9
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 9.1e-62 240.7 194 67.5
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.5e-59 233.4 194 63.4
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 3.7e-55 218.8 193 61.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.9e-47 191.8 194 53.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 2.4e-46 189.5 190 58.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.0e-44 184.1 192 53.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.3e-44 183.7 194 53.6
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 5.0e-44 181.8 189 57.1
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.6e-42 176.8 194 53.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.6e-42 175.6 189 56.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.0e-41 174.1 197 51.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.0e-41 172.2 201 50.7
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.9e-41 171.0 191 50.8
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.5e-40 170.2 194 50.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.0e-40 169.9 194 50.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.6e-40 169.5 194 53.6
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-39 167.2 192 54.2
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.2e-39 166.4 187 54.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-39 166.0 187 52.4
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.9e-39 166.0 201 47.3
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.7e-39 165.6 194 53.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 6.4e-39 164.9 193 51.8
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 6.4e-39 164.9 191 48.2
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-38 164.1 187 54.0
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.2e-38 162.5 194 49.5
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 4.1e-38 162.2 190 49.5
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 5.4e-38 161.8 203 46.8
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 5.4e-38 161.8 188 48.9
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.0e-38 161.4 183 53.0
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.0e-38 161.4 194 51.5
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 7.0e-38 161.4 194 48.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-37 160.2 187 50.8
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.6e-37 160.2 193 47.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 6.0e-37 158.3 188 47.9
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.8e-37 157.9 201 47.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.3e-36 157.1 184 48.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.0e-36 155.2 192 50.0
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.0e-36 155.2 195 47.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.6e-36 154.8 200 44.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 8.6e-36 154.5 200 50.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 8.6e-36 154.5 202 46.5
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.9e-35 153.3 187 50.8
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.9e-35 153.3 194 44.8
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.5e-35 152.9 184 47.8
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.5e-35 152.9 187 51.9
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 3.3e-35 152.5 196 45.9
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.3e-35 152.1 190 46.8
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 5.6e-35 151.8 181 47.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.3e-35 151.4 207 46.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.6e-34 150.2 180 48.9
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.8e-34 149.4 186 47.8
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-34 149.4 187 49.2
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 2.8e-34 149.4 177 49.2
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.8e-34 149.4 188 50.0
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 6.2e-34 148.3 185 43.8
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.4e-33 147.1 179 48.6
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.4e-33 147.1 188 47.3
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.4e-33 147.1 186 44.6
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-33 146.7 178 48.3
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.1e-33 146.0 194 48.5
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.0e-33 145.6 180 48.9
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 8.9e-33 144.4 196 44.4
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.5e-32 143.7 189 44.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 1.5e-32 143.7 190 47.9
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.0e-32 143.3 194 47.9
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.0e-32 143.3 182 48.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.6e-32 142.9 187 47.6
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 3.4e-32 142.5 180 44.4
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.4e-32 142.5 184 47.8
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 4.4e-32 142.1 177 52.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 4.4e-32 142.1 191 47.6
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.3e-31 140.6 187 48.7
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.7e-31 140.2 195 48.2
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.7e-31 140.2 195 48.2
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.7e-31 140.2 195 48.2
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.7e-31 140.2 191 46.6
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.9e-31 139.4 196 42.9
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 3.7e-31 139.0 211 45.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 4.9e-31 138.7 181 47.0
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 8.3e-31 137.9 183 42.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-30 137.1 180 46.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.4e-30 137.1 179 46.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.4e-30 136.3 187 47.1
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-30 136.3 206 44.7
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-30 136.3 178 45.5
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.4e-30 136.3 190 45.8
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 3.2e-30 136.0 211 45.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 4.1e-30 135.6 193 45.6
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 5.4e-30 135.2 180 46.7
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 9.2e-30 134.4 184 42.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-29 134.0 186 45.7
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-29 134.0 183 48.6
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.1e-29 133.3 183 42.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.5e-29 132.5 186 43.5
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 3.5e-29 132.5 178 44.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 3.5e-29 132.5 187 47.1
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 3.5e-29 132.5 178 44.9
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.5e-29 132.5 180 43.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.6e-29 132.1 187 47.1
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.6e-29 132.1 187 47.1
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.0e-29 131.7 182 44.0
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-28 130.6 188 44.1
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.3e-28 129.8 188 46.8
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 2.3e-28 129.8 181 42.5
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.3e-28 129.8 190 46.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.0e-28 129.4 183 44.3
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.0e-28 129.4 178 46.6
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 5.1e-28 128.6 177 46.3
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 5.1e-28 128.6 177 46.3
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 5.1e-28 128.6 177 45.2
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 8.6e-28 127.9 181 43.6
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-27 127.1 170 50.0
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.9e-27 126.7 187 43.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.9e-27 126.7 210 42.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.5e-27 126.3 182 47.3
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.6e-26 123.6 188 42.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-26 123.2 183 42.6
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-26 123.2 183 42.6
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-26 123.2 183 42.6
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.1e-26 123.2 183 42.6
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 3.6e-26 122.5 185 44.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 4.7e-26 122.1 191 41.4
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 6.2e-26 121.7 183 42.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.1e-26 121.3 166 48.8
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.4e-25 120.6 187 41.7
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-25 120.6 156 48.1
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.4e-25 120.6 192 43.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.8e-25 120.2 185 37.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.3e-25 119.8 170 46.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.3e-25 119.8 184 42.4
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 5.2e-25 118.6 187 41.7
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-24 117.5 182 42.3
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 4.4e-24 115.5 120 48.3
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.4e-23 111.3 177 43.5
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.4e-22 110.5 185 41.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.4e-22 109.8 180 43.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-21 107.5 174 40.8
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-21 105.5 178 41.6
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.6e-21 105.5 181 37.0
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.0e-20 102.8 112 48.2
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 5.1e-20 102.1 206 39.3
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-18 96.7 125 47.2
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.8e-17 93.6 169 39.6
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.8e-17 93.6 172 36.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 5.2e-17 92.0 177 38.4
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-17 91.3 86 53.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.9e-17 91.3 154 43.5
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.0e-16 90.1 97 50.5
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.3e-15 87.4 122 44.3
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.3e-15 87.4 169 39.1
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-14 82.8 115 46.1
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 4.2e-14 82.4 214 34.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 7.1e-14 81.6 178 38.2
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-13 79.7 119 43.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-13 79.0 130 40.0
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.0e-12 77.8 185 31.4
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-12 77.8 74 59.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.0e-12 76.3 177 35.6
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.9e-12 75.9 214 34.6
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 3.3e-11 72.8 108 38.9
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.3e-11 72.4 194 35.6
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.3e-11 71.6 156 37.8
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.8e-10 68.9 198 29.8
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.1e-09 67.8 174 33.9
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.8e-09 67.0 204 29.9
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.4e-09 66.6 92 45.7
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.1e-09 66.2 167 29.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 9.0e-09 64.7 164 28.7
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.5e-08 62.4 206 35.0
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.7e-07 60.5 173 32.4
MBI07_g42010_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 3.2e-06 56.2 196 24.0
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 5.4e-06 55.5 195 27.2


User provided reference genes

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