Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.2e-121 439.9 226 100.0
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 7.5e-108 394.0 230 90.9
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.4e-106 389.8 230 90.0
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 6.4e-99 364.4 226 84.5
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.6e-97 359.8 228 82.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.3e-96 355.9 228 81.6
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 8.6e-96 354.0 228 81.1
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.1e-95 353.6 227 84.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 4.0e-93 345.1 229 80.8
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 9.2e-90 334.0 233 79.0
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 7.8e-89 330.9 229 79.0
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.8e-86 322.4 228 75.0
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.6e-86 322.0 255 70.6
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.2e-85 318.2 225 74.2
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.2e-85 318.2 225 74.2
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 2.6e-84 315.8 214 76.6
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.9e-83 312.4 210 77.1
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 4.9e-83 311.6 232 72.8
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.4e-82 309.3 236 70.3
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.2e-81 307.0 231 72.7
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.2e-81 307.0 220 74.5
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 1.6e-81 306.6 253 66.8
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.1e-81 306.2 230 72.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.1e-81 306.2 227 72.7
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 3.9e-80 302.0 213 73.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 3.9e-80 302.0 230 71.7
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.9e-80 302.0 216 72.7
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 6.6e-80 301.2 232 72.4
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.7e-80 300.8 216 72.7
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-79 300.4 215 73.5
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.1e-79 300.4 212 74.1
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.3e-79 298.5 230 69.6
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 4.3e-79 298.5 231 71.0
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 7.3e-79 297.7 227 70.5
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 2.4e-77 292.7 236 69.9
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 2.4e-77 292.7 235 66.0
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 4.0e-77 292.0 209 74.2
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 6.9e-77 291.2 233 69.5
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.6e-76 289.3 219 70.8
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 2.6e-76 289.3 228 69.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 5.8e-76 288.1 209 72.2
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.9e-75 285.8 209 72.7
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 2.4e-74 282.7 212 70.8
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 4.2e-74 282.0 231 67.1
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.2e-73 280.4 216 69.9
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 6.0e-73 278.1 228 65.8
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.7e-72 276.6 215 69.8
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 3.9e-72 275.4 231 67.5
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 5.1e-72 275.0 243 63.8
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.6e-72 274.6 227 65.6
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.9e-71 273.1 220 66.4
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 3.3e-71 272.3 276 58.0
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 4.3e-71 271.9 210 69.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 5.6e-71 271.6 184 75.5
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.3e-70 270.4 213 68.1
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 1.3e-70 270.4 213 68.1
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.6e-70 270.0 213 68.1
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 2.1e-70 269.6 224 66.5
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 3.6e-70 268.9 224 67.0
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.4e-69 266.9 220 65.5
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 4.0e-69 265.4 234 63.7
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 4.0e-69 265.4 185 75.1
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 5.3e-69 265.0 235 63.8
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 6.9e-69 264.6 227 63.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.2e-68 263.8 185 74.6
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.0e-68 263.1 214 67.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.6e-68 262.7 201 72.6
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 5.8e-68 261.5 216 65.3
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.6e-68 261.2 200 72.0
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 7.6e-68 261.2 231 64.5
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.7e-67 260.0 198 72.2
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 8.4e-67 257.7 211 66.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.9e-66 256.5 216 66.2
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 3.0e-64 249.2 244 60.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 2.5e-63 246.1 216 65.3
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.3e-62 243.8 228 62.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.8e-62 242.7 231 63.2
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.1e-61 240.7 212 65.1
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 6.9e-61 238.0 226 59.7
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 6.9e-61 238.0 212 64.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.3e-59 233.8 229 60.7
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.3e-59 233.8 228 61.4
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 8.4e-59 231.1 235 60.0
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 5.5e-58 228.4 211 63.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 2.7e-57 226.1 214 62.6
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.5e-57 225.7 220 60.9
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 3.5e-57 225.7 229 60.7
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.3e-56 223.0 180 67.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 8.7e-56 221.1 206 63.6
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 8.7e-56 221.1 206 63.6
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.3e-55 219.2 184 64.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 5.7e-55 218.4 186 67.2
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 5.7e-55 218.4 186 67.2
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 5.7e-55 218.4 186 67.2
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 6.3e-54 214.9 185 62.7
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 6.3e-54 214.9 263 52.5
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.8e-53 213.4 185 62.2
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 9.0e-53 211.1 371 41.2
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.5e-52 210.3 179 67.0
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.3e-51 207.2 150 70.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.2e-51 206.5 187 61.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 2.2e-51 206.5 200 61.5
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.1e-50 204.1 222 57.2
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.4e-50 203.8 232 53.9
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 7.9e-49 198.0 167 65.3
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 7.9e-49 198.0 213 56.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.3e-48 196.4 232 53.0
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.5e-47 193.7 154 68.2
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.5e-47 193.0 225 52.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 3.7e-46 189.1 236 54.2
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 4.1e-45 185.7 183 60.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.6e-44 183.0 278 48.9
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.2e-43 179.9 152 61.8
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.2e-41 174.1 234 50.4
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 3.6e-41 172.6 188 53.2
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.2e-36 157.5 168 58.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.6e-33 147.1 159 52.8
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.3e-27 127.5 145 54.5
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 8.0e-25 118.2 216 42.6
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 5.2e-24 115.5 117 56.4
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 5.2e-24 115.5 126 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 2.6e-23 113.2 204 42.2
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.1e-21 107.8 237 38.4
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.9e-18 97.1 76 67.1
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 8.8e-16 88.2 138 44.9
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.8e-13 80.5 134 44.8
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-12 77.8 55 67.3
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.6e-12 77.4 78 53.8
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 9.4e-10 68.2 88 50.0
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.0e-08 64.7 74 52.7
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 5.7e-07 58.9 48 62.5
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 1.3e-06 57.8 58 55.2
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 2.8e-06 56.6 58 53.4


User provided reference genes

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