Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G007166 Glycine max HOM05D006046 ORTHO05D007580 3.8e-66 254.6 120 100.0
arahy.Tifrunner.gnm1.ann1.11DDVR Arachis hypogaea HOM05D006046 ORTHO05D007580 1.5e-51 206.1 116 83.6
Psat6g158600 Pisum sativum HOM05D006046 ORTHO05D007580 1.5e-51 206.1 116 83.6
Potri.002G186300 Populus trichocarpa HOM05D006046 ORTHO05D007580 2.0e-51 205.7 116 83.6
Sabra02G0148100 Salix brachista HOM05D006046 ORTHO05D007580 2.0e-51 205.7 116 83.6
Sabra02G0148500 Salix brachista HOM05D006046 ORTHO05D007580 2.0e-51 205.7 116 83.6
THA.LOC104825927 Tarenaya hassleriana HOM05D006046 ORTHO05D007580 2.0e-51 205.7 115 84.3
Phvul.007G208700 Phaseolus vulgaris HOM05D006046 ORTHO05D007580 2.6e-51 205.3 116 82.8
arahy.Tifrunner.gnm1.ann1.01TYUM Arachis hypogaea HOM05D006046 ORTHO05D007580 3.4e-51 204.9 116 82.8
Glyma.10G138600 Glycine max HOM05D006046 ORTHO05D007580 3.4e-51 204.9 116 85.3
Medtr1g085730 Medicago truncatula HOM05D006046 ORTHO05D007580 3.4e-51 204.9 116 84.5
TPR.G3061 Trifolium pratense HOM05D006046 ORTHO05D007580 5.9e-51 204.1 116 83.6
MELO3C005189.2 Cucumis melo HOM05D006046 ORTHO05D007580 7.7e-51 203.8 116 83.6
Lj5g0023586 Lotus japonicus HOM05D006046 ORTHO05D007580 1.7e-50 202.6 116 82.8
Sp6g01580 Schrenkiella parvula HOM05D006046 ORTHO05D007580 1.7e-50 202.6 115 83.5
CsaV3_5G018640 Cucumis sativus L. HOM05D006046 ORTHO05D007580 2.9e-50 201.8 116 82.8
C05p01130 Brassica napus HOM05D006046 ORTHO05D007580 3.8e-50 201.4 119 81.5
BolC5t28894H Brassica oleracea HOM05D006046 ORTHO05D007580 3.8e-50 201.4 119 81.5
Potri.014G111600 Populus trichocarpa HOM05D006046 ORTHO05D007580 3.8e-50 201.4 116 81.9
Thhalv10028544m.g Eutrema salsugineum HOM05D006046 ORTHO05D007580 5.0e-50 201.1 115 82.6
Sed0026667 Sechium edule HOM05D006046 ORTHO05D007580 5.0e-50 201.1 116 81.9
CiPaw.07G126200 Carya illinoinensis HOM05D006046 ORTHO05D007580 6.5e-50 200.7 116 81.9
CARHR249980 Cardamine hirsuta HOM05D006046 ORTHO05D007580 8.5e-50 200.3 115 83.5
PGR142G1127 Punica granatum HOM05D006046 ORTHO05D007580 8.5e-50 200.3 116 81.0
Sed0002893 Sechium edule HOM05D006046 ORTHO05D007580 8.5e-50 200.3 116 81.9
AT4G01690 Arabidopsis thaliana HOM05D006046 ORTHO05D007580 1.4e-49 199.5 115 83.5
Cpa.g.sc57.26 Carica papaya HOM05D006046 ORTHO05D007580 1.9e-49 199.1 116 80.2
Actinidia21336 Actinidia chinensis HOM05D006046 ORTHO05D007580 2.5e-49 198.7 116 81.0
Eucgr.K00558 Eucalyptus grandis HOM05D006046 ORTHO05D007580 3.2e-49 198.4 114 81.6
SGA_v2.0_scaffold572G52966 Striga asiatica HOM05D006046 ORTHO05D007580 3.2e-49 198.4 116 80.2
BcaC05g24615 Brassica carinata HOM05D006046 ORTHO05D007580 4.2e-49 198.0 115 82.6
A10p01090 Brassica napus HOM05D006046 ORTHO05D007580 4.2e-49 198.0 115 82.6
BraA10t42387Z Brassica rapa HOM05D006046 ORTHO05D007580 4.2e-49 198.0 115 82.6
Lalb_Chr21g0309871 Lupinus albus HOM05D006046 ORTHO05D007580 4.2e-49 198.0 116 80.2
AL6G51640 Arabidopsis lyrata HOM05D006046 ORTHO05D007580 5.5e-49 197.6 115 82.6
Manes.05G008200 Manihot esculenta HOM05D006046 ORTHO05D007580 5.5e-49 197.6 116 81.0
Carub.0006s3551 Capsella rubella HOM05D006046 ORTHO05D007580 9.4e-49 196.8 115 82.6
CDE11G0173 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 9.4e-49 196.8 116 80.2
CAN.G179.31 Capsicum annuum HOM05D006046 ORTHO05D007580 1.2e-48 196.4 116 79.3
Ah.12g061390 Amaranthus hybridus HOM05D006046 ORTHO05D007580 1.6e-48 196.1 118 78.8
ATR0796G090 Amborella trichopoda HOM05D006046 ORTHO05D007580 1.6e-48 196.1 116 80.2
Dinv33175 Davidia involucrata HOM05D006046 ORTHO05D007580 1.6e-48 196.1 116 79.3
TAR633G1601 Trochodendron aralioides HOM05D006046 ORTHO05D007580 1.6e-48 196.1 116 79.3
Lalb_Chr02g0147181 Lupinus albus HOM05D006046 ORTHO05D007580 2.1e-48 195.7 117 79.5
Ciclev10019590m.g Citrus clementina HOM05D006046 ORTHO05D007580 2.7e-48 195.3 116 80.2
QL12p035018 Quercus lobata HOM05D006046 ORTHO05D007580 2.7e-48 195.3 116 79.3
GSVIVG01028241001 Vitis vinifera HOM05D006046 ORTHO05D007580 4.6e-48 194.5 116 80.2
CANSAT25G3010 Cannabis sativa HOM05D006046 ORTHO05D007580 6.1e-48 194.1 116 79.3
CSS0022330 Camellia sinensis var. sinensis HOM05D006046 ORTHO05D007580 7.9e-48 193.7 116 79.3
DCAR_002940 Daucus carota HOM05D006046 ORTHO05D007580 7.9e-48 193.7 116 79.3
TAR362G0326 Trochodendron aralioides HOM05D006046 ORTHO05D007580 7.9e-48 193.7 116 77.6
Aa31LG5G1400 Aethionema arabicum HOM05D006046 ORTHO05D007580 1.0e-47 193.4 130 72.3
Peaxi162Scf00309g00623 Petunia axillaris HOM05D006046 ORTHO05D007580 1.4e-47 193.0 116 79.3
Prupe.3G001700 Prunus persica HOM05D006046 ORTHO05D007580 1.4e-47 193.0 118 76.3
Hund03590 Selenicereus undatus HOM05D006046 ORTHO05D007580 1.4e-47 193.0 116 78.4
Thecc.01G326200 Theobroma cacao HOM05D006046 ORTHO05D007580 1.4e-47 193.0 116 79.3
MSTRG.18059 Avicennia marina HOM05D006046 ORTHO05D007580 2.3e-47 192.2 116 76.7
Gohir.D11G110200 Gossypium hirsutum HOM05D006046 ORTHO05D007580 2.3e-47 192.2 116 77.6
Gorai.007G117800 Gossypium raimondii HOM05D006046 ORTHO05D007580 2.3e-47 192.2 116 77.6
MD09G1291200 Malus domestica HOM05D006046 ORTHO05D007580 2.3e-47 192.2 118 76.3
HPP92_010589 Vanilla planifolia HOM05D006046 ORTHO05D007580 3.0e-47 191.8 116 77.6
Migut.D00009 Erythranthe guttata HOM05D006046 ORTHO05D007580 3.9e-47 191.4 116 78.4
Atru.chr5.852 Acer truncatum HOM05D006046 ORTHO05D007580 5.1e-47 191.0 116 78.4
Oeu052589.3 Olea europaea HOM05D006046 ORTHO05D007580 5.1e-47 191.0 116 77.6
Duzib138G1207 Durio zibethinus HOM05D006046 ORTHO05D007580 2.0e-46 189.1 116 76.7
RcHm_v2.0_Chr3g0485661 Rosa chinensis HOM05D006046 ORTHO05D007580 2.0e-46 189.1 117 76.1
Solyc01g079090.4 Solanum lycopersicum HOM05D006046 ORTHO05D007580 2.0e-46 189.1 116 77.6
Sopen01g030600 Solanum pennellii HOM05D006046 ORTHO05D007580 2.0e-46 189.1 116 77.6
PGSC0003DMG400001117 Solanum tuberosum HOM05D006046 ORTHO05D007580 2.0e-46 189.1 116 77.6
ECA247G1361 Erigeron canadensis HOM05D006046 ORTHO05D007580 3.3e-46 188.3 116 76.7
Gohir.A11G105300 Gossypium hirsutum HOM05D006046 ORTHO05D007580 3.3e-46 188.3 116 76.7
AUR62040510 Chenopodium quinoa HOM05D006046 ORTHO05D007580 4.3e-46 188.0 116 75.9
Hma1.2p1_0408F.1_g146250 Hydrangea macrophylla HOM05D006046 ORTHO05D007580 4.3e-46 188.0 116 75.9
VMungo0720G0414 Vigna mungo HOM05D006046 ORTHO05D007580 5.7e-46 187.6 148 64.9
Aqoxy5G02854 Aquilegia oxysepala HOM05D006046 ORTHO05D007580 7.4e-46 187.2 115 76.5
Duzib133G1070 Durio zibethinus HOM05D006046 ORTHO05D007580 7.4e-46 187.2 116 76.7
FvH4_1g26170 Fragaria vesca HOM05D006046 ORTHO05D007580 7.4e-46 187.2 118 75.4
FAN19G1511 Fragaria x ananassa HOM05D006046 ORTHO05D007580 7.4e-46 187.2 118 75.4
COL.COLO4_23120 Corchorus olitorius HOM05D006046 ORTHO05D007580 9.7e-46 186.8 116 76.7
Nn4g25300 Nelumbo nucifera HOM05D006046 ORTHO05D007580 9.7e-46 186.8 116 76.7
Rhsim01G0000700 Rhododendron simsii HOM05D006046 ORTHO05D007580 9.7e-46 186.8 116 76.7
TWI59G0782 Tripterygium wilfordii HOM05D006046 ORTHO05D007580 1.3e-45 186.4 116 74.1
FAN28G0956 Fragaria x ananassa HOM05D006046 ORTHO05D007580 1.7e-45 186.0 118 74.6
Lsat_1_v5_gn_9_7041 Lactuca sativa HOM05D006046 ORTHO05D007580 1.7e-45 186.0 116 75.9
AUR62042113 Chenopodium quinoa HOM05D006046 ORTHO05D007580 2.2e-45 185.7 116 75.0
HanXRQChr10g0286481 Helianthus annuus HOM05D006046 ORTHO05D007580 2.2e-45 185.7 116 76.7
Zm00001eb332380 Zea mays HOM05D006046 ORTHO05D007580 2.2e-45 185.7 112 78.6
FAN23G1049 Fragaria x ananassa HOM05D006046 ORTHO05D007580 4.8e-45 184.5 118 73.7
Os01g0286600 Oryza sativa ssp. japonica HOM05D006046 ORTHO05D007580 8.2e-45 183.7 112 77.7
FAN26G1773 Fragaria x ananassa HOM05D006046 ORTHO05D007580 4.1e-44 181.4 118 73.7
Mapoly0001s0469 Marchantia polymorpha HOM05D006046 ORTHO05D007580 4.1e-44 181.4 116 73.3
AagrBONN_evm.TU.Sc2ySwM_368.2775 Anthoceros agrestis HOM05D006046 ORTHO05D007580 9.1e-44 180.3 112 75.9
Cc01_g21760 Coffea canephora HOM05D006046 ORTHO05D007580 2.0e-43 179.1 116 73.3
EL10Ac2g02399 Beta vulgaris HOM05D006046 ORTHO05D007580 5.9e-43 177.6 116 73.3
PSO210G0070 Papaver somniferum HOM05D006046 ORTHO05D007580 5.9e-43 177.6 115 73.0
PSO761G0347 Papaver somniferum HOM05D006046 ORTHO05D007580 5.9e-43 177.6 115 73.0
Lj1C7T2 Lonicera japonica HOM05D006046 ORTHO05D007580 1.4e-41 172.9 116 72.4
SMO356G0553 Selaginella moellendorffii HOM05D006046 ORTHO05D007580 1.9e-41 172.6 139 62.6
Pp3c1_34400 Physcomitrium patens HOM05D006046 ORTHO05D007580 9.4e-41 170.2 116 66.4
Ca_10238_v3 Cicer arietinum L. HOM05D006046 ORTHO05D007580 1.6e-40 169.5 96 84.4
CBR_g88557 Chara braunii HOM05D006046 ORTHO05D007580 7.9e-40 167.2 113 71.7
ClCG01G007200 Citrullus lanatus HOM05D006046 ORTHO05D007580 3.7e-37 158.3 91 83.5
Cre09.g396300 Chlamydomonas reinhardtii HOM05D006046 ORTHO05D007580 2.2e-34 149.1 117 64.1
Haze_05155 Corylus avellana HOM05D006046 ORTHO05D007580 8.5e-34 147.1 104 69.2
vmacro02355 Vaccinium macrocarpon HOM05D006046 ORTHO05D007580 2.1e-32 142.5 91 75.8
PRCOL_00002487 Prasinoderma coloniale HOM05D006046 ORTHO05D007580 3.0e-31 138.7 117 54.7
Nitab4.5_0000222g0400 Nicotiana tabacum HOM05D006046 ORTHO05D007580 4.1e-28 128.3 80 76.2
Nitab4.5_0003092g0030 Nicotiana tabacum HOM05D006046 ORTHO05D007580 4.1e-28 128.3 80 76.2
MCO14G379 Micromonas commoda HOM05D006046 ORTHO05D007580 6.5e-26 120.9 112 49.1
AUR62044205 Chenopodium quinoa HOM05D006046 ORTHO05D007580 2.5e-25 119.0 73 74.0
Os10g0473800 Oryza sativa ssp. japonica HOM05D006046 ORTHO05D007580 7.0e-20 100.9 56 82.1
Sabra14G0082000 Salix brachista HOM05D006046 ORTHO05D007580 1.0e-18 97.1 113 50.4
CDE05G3479 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 1.3e-10 70.1 35 88.6
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 6.6e-10 67.8 50 66.0
CDE05G0285 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 2.5e-09 65.9 50 66.0
Hma1.2p1_0408F.1_g146260 Hydrangea macrophylla HOM05D006046 ORTHO05D007580 2.1e-08 62.8 50 64.0
arahy.Tifrunner.gnm1.ann1.X26H0K Arachis hypogaea HOM05D006046 ORTHO05D007580 6.1e-08 61.2 88 40.9


User provided reference genes

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