Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1490.7 793 100.0
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 0.0e+00 1283.5 828 84.9
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 0.0e+00 1156.0 797 79.0
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 5.4e-294 1014.2 736 75.1
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.7e-268 929.5 818 65.9
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 2.7e-245 852.4 799 63.2
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 7.4e-243 844.3 766 65.5
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.4e-238 830.1 777 63.7
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 2.2e-223 779.6 787 61.4
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 5.2e-196 688.7 821 53.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 5.8e-147 525.8 630 52.4
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 1.1e-137 495.0 542 56.8
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.8e-132 477.6 797 42.4
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 1.8e-127 461.1 816 40.6
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.4e-121 441.4 817 39.9
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 8.7e-119 432.2 835 39.4
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.5e-118 431.4 875 36.7
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 3.7e-117 426.8 772 40.3
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 3.7e-117 426.8 770 40.0
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.7e-114 417.9 811 38.6
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 5.0e-114 416.4 821 38.6
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 6.5e-114 416.0 830 37.6
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 8.5e-114 415.6 876 36.9
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.6e-112 411.4 826 37.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 5.7e-110 402.9 807 39.4
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.3e-109 401.7 808 38.4
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 1.7e-109 401.4 662 42.6
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 3.0e-103 380.6 774 37.3
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 3.9e-103 380.2 805 36.0
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 8.2e-101 372.5 895 34.2
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 2.4e-100 370.9 840 37.1
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 5.3e-100 369.8 805 37.8
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.9e-99 366.3 895 34.0
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-96 358.6 804 37.3
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 3.0e-95 354.0 831 36.8
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.1e-94 352.1 793 37.2
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.5e-89 334.3 806 35.5
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.5e-89 334.3 876 33.1
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.7e-88 330.1 884 33.7
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.0e-87 327.4 802 35.4
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.0e-86 324.7 876 33.3
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 1.7e-85 321.6 797 34.1
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.2e-85 321.2 812 34.2
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.8e-85 320.9 864 33.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.7e-85 320.5 755 36.6
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 3.7e-85 320.5 810 34.3
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.8e-84 318.2 793 35.1
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.4e-84 317.8 927 31.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 9.1e-84 315.8 871 32.5
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.9e-82 310.8 874 31.9
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 5.9e-75 286.6 209 77.5
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.0e-74 283.5 934 30.8
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 3.6e-72 277.3 967 30.4
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 2.3e-71 274.6 759 32.7
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.2e-70 272.3 913 29.9
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 9.8e-70 269.2 814 31.1
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.4e-68 265.4 807 30.6
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 4.1e-68 263.8 805 31.4
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 7.0e-68 263.1 810 30.4
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 9.2e-68 262.7 814 32.7
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 3.9e-66 257.3 807 31.6
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 3.9e-66 257.3 805 31.7
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.1e-65 255.8 533 37.7
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.9e-65 255.0 795 31.8
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.9e-65 255.0 837 30.6
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.2e-64 252.3 803 30.8
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 3.1e-63 247.7 811 30.6
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 1.7e-61 241.9 895 30.6
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.7e-61 240.7 816 30.6
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 8.3e-61 239.6 804 30.1
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 9.2e-60 236.1 820 30.9
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 9.2e-60 236.1 829 30.2
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.0e-59 235.0 790 31.4
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 3.5e-59 234.2 962 27.8
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.5e-59 234.2 834 29.5
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 4.6e-59 233.8 826 29.8
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.7e-58 231.9 549 35.9
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 1.5e-57 228.8 708 31.6
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 2.8e-56 224.6 818 29.2
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 4.7e-56 223.8 522 36.4
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 2.3e-55 221.5 798 30.7
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 2.6e-54 218.0 823 28.4
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 2.2e-53 214.9 758 30.3
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 4.9e-53 213.8 844 28.8
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 1.4e-52 212.2 821 30.1
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.4e-52 212.2 822 27.6
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 3.2e-52 211.1 787 28.7
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 5.4e-52 210.3 796 28.8
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 7.1e-52 209.9 585 32.8
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 1.6e-51 208.8 629 30.5
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 5.6e-49 200.3 222 52.3
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.4e-47 195.7 627 31.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 3.4e-46 191.0 766 29.6
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.2e-43 182.6 850 27.5
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 7.8e-43 179.9 816 28.2
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.0e-42 179.5 789 29.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 4.3e-41 174.1 831 27.8
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 2.8e-40 171.4 900 27.6
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.1e-39 167.9 886 26.9
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.7e-37 162.2 137 59.9
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.4e-36 159.1 494 32.8
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 6.0e-35 153.7 457 32.6
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 7.8e-35 153.3 801 27.1
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.1e-32 145.2 140 53.6
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.8e-31 142.1 616 28.4
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.8e-31 142.1 686 27.6
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 7.6e-30 136.7 107 67.3
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 6.4e-29 133.7 165 46.1
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 5.4e-28 130.6 701 27.1
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.7e-26 125.6 99 65.7
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.9e-25 122.1 444 29.3
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.6e-22 111.7 873 24.4
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.2e-21 108.6 167 40.7
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 6.4e-21 107.1 160 40.0
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.3e-13 82.8 80 53.8
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-12 79.7 116 39.7
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 3.2e-12 78.2 181 41.4
VMungo0251G2966 Vigna mungo HOM05D005434 ORTHO05D006412 3.5e-11 74.7 259 29.7
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 6.0e-11 73.9 200 26.5
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.3e-10 72.0 142 32.4
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.3e-10 72.0 521 23.2
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 8.7e-10 70.1 137 32.8
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 5.7e-09 67.4 76 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 1.8e-07 62.4 178 24.2
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 1.8e-07 62.4 211 22.7
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 3.1e-07 61.6 80 42.5
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 4.1e-07 61.2 97 47.4
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.5e-06 57.8 174 31.0
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 5.9e-06 57.4 180 21.7


User provided reference genes

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