Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 3.0e-111 405.2 208 100.0
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 1.6e-88 329.7 219 83.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.0e-78 296.2 242 72.3
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.4e-63 246.9 241 62.7
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 1.7e-50 203.4 211 61.1
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 6.2e-48 194.9 208 58.2
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 6.4e-45 184.9 213 56.8
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 2.4e-44 183.0 208 54.8
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.0e-42 177.6 212 50.0
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 6.6e-42 174.9 211 52.6
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.5e-41 172.9 208 54.3
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 6.2e-40 168.3 211 52.1
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.8e-39 166.8 208 54.8
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.3e-34 150.6 206 48.5
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.3e-34 149.8 211 50.7
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 3.9e-34 149.1 212 51.4
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 6.2e-32 141.7 222 45.5
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 3.1e-31 139.4 212 47.2
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 2.9e-29 132.9 217 45.2
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 3.8e-29 132.5 217 45.2
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 6.4e-29 131.7 234 43.6
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 2.4e-28 129.8 208 44.7
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 2.1e-27 126.7 206 41.7
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 2.7e-27 126.3 214 43.5
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 8.7e-26 121.3 213 44.1
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.9e-25 120.2 216 42.6
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.9e-25 120.2 229 40.6
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.5e-25 119.8 232 40.5
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 2.1e-24 116.7 225 40.4
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 3.6e-24 115.9 211 42.7
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 4.0e-23 112.5 228 40.8
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 6.9e-23 111.7 208 44.7
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 2.6e-22 109.8 215 38.1
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.4e-20 104.0 227 41.0
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.4e-20 104.0 217 38.7
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 4.2e-20 102.4 220 38.2
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 4.2e-20 102.4 204 38.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 5.4e-20 102.1 220 38.2
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 1.6e-19 100.5 221 36.7
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 6.0e-19 98.6 214 37.9
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 6.0e-19 98.6 182 41.2
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 6.0e-19 98.6 221 37.6
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 7.8e-19 98.2 217 38.2
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 1.0e-18 97.8 214 36.4
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 1.7e-18 97.1 204 39.7
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 5.1e-18 95.5 204 39.2
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.1e-17 94.4 230 34.8
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 4.3e-17 92.4 218 37.2
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 4.3e-17 92.4 207 33.3
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 7.3e-17 91.7 135 45.9
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 4.8e-16 89.0 220 37.3
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 6.2e-16 88.6 207 35.7
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 1.4e-15 87.4 233 34.8
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.4e-15 86.7 214 35.5
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 1.2e-14 84.3 239 33.5
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 3.4e-14 82.8 204 34.3
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 5.8e-14 82.0 218 34.9
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 7.6e-14 81.6 212 33.5
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 7.6e-14 81.6 204 31.4
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 9.9e-14 81.3 216 34.7
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 2.2e-13 80.1 203 34.5
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.9e-13 79.7 211 31.8
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 3.8e-13 79.3 212 32.1
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 3.8e-13 79.3 211 31.8
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.9e-13 79.0 202 33.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.4e-12 77.4 211 30.8
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 1.4e-12 77.4 198 33.8
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.4e-12 77.4 209 33.5
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.4e-12 77.4 201 31.3
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.9e-12 77.0 217 32.3
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 1.9e-12 77.0 199 37.2
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 2.4e-12 76.6 216 34.3
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 7.1e-12 75.1 212 31.1
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 1.2e-11 74.3 198 33.3
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.2e-11 74.3 208 29.8
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.2e-11 74.3 61 60.7
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 1.6e-11 73.9 218 34.9
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.6e-11 73.9 214 33.2
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.7e-11 73.2 208 29.3
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.7e-11 73.2 208 29.3
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 4.6e-11 72.4 230 31.7
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 6.0e-11 72.0 217 33.6
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.8e-10 70.5 192 32.3
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 3.0e-10 69.7 211 28.9
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 1.1e-09 67.8 232 28.0
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 1.1e-09 67.8 182 35.7
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.5e-09 67.4 92 45.7
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.6e-09 65.5 208 30.8
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 9.6e-09 64.7 219 28.8
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.6e-08 63.9 213 29.1
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 2.1e-08 63.5 67 50.7
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 2.8e-08 63.2 192 33.3
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 2.8e-08 63.2 90 43.3
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 6.2e-08 62.0 224 29.5
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 9.0e-07 58.2 198 27.8
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.5e-06 57.4 200 28.0
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 4.5e-06 55.8 203 28.6
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 5.8e-06 55.5 208 27.9
Sabra02G0030800 Salix brachista HOM05D008367 ORTHO05D010529 5.8e-06 55.5 200 27.0
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 7.6e-06 55.1 247 27.5
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.9e-06 54.7 209 31.1
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 9.9e-06 54.7 199 27.1


User provided reference genes

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