Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 0.0e+00 1384.0 731 100.0
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 0.0e+00 1187.6 741 85.0
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 6.0e-311 1070.5 751 76.7
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.8e-305 1051.6 751 75.8
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.6e-260 901.7 717 69.7
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 2.4e-256 889.0 683 68.4
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.3e-254 883.2 677 68.7
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 6.6e-254 880.9 734 64.9
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 1.2e-252 876.7 735 65.4
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.7e-249 866.3 736 63.3
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 9.2e-248 860.5 737 64.9
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 4.1e-240 835.1 677 66.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.0e-230 803.9 669 62.0
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 6.6e-230 801.2 671 62.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.6e-228 796.6 671 61.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 6.8e-227 791.2 662 62.2
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.4e-226 788.5 672 60.7
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 9.2e-224 780.8 672 60.7
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 2.1e-223 779.6 671 60.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 2.1e-223 779.6 665 61.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.6e-223 778.5 665 61.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.0e-222 777.3 672 60.3
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.3e-222 776.9 674 60.1
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.7e-222 776.5 667 61.8
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 8.6e-222 774.2 661 60.4
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 8.6e-222 774.2 657 61.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.1e-221 773.9 669 62.3
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 4.3e-221 771.9 677 61.3
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.6e-221 770.8 668 60.6
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.2e-220 770.4 678 59.1
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.1e-220 769.6 668 60.8
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 6.2e-220 768.1 678 60.0
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.8e-219 766.5 668 60.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 4.0e-219 765.4 675 59.6
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.2e-218 763.8 691 58.8
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.6e-218 762.7 669 59.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.4e-218 762.3 669 60.1
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.4e-218 762.3 675 62.2
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 4.4e-218 761.9 664 60.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 9.9e-218 760.8 676 58.7
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 9.9e-218 760.8 666 60.1
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.2e-217 759.6 680 59.7
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.9e-217 759.2 672 59.8
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 6.4e-217 758.1 695 57.7
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 5.4e-216 755.0 667 58.8
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 7.1e-216 754.6 670 58.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.1e-216 754.6 666 58.7
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 9.3e-216 754.2 700 58.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.2e-215 753.8 669 59.3
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.6e-215 753.4 656 60.4
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 3.5e-215 752.3 667 58.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 6.0e-215 751.5 667 58.5
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.3e-214 749.6 712 57.9
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 3.0e-214 749.2 667 58.0
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.9e-214 748.8 670 58.4
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 8.7e-214 747.7 667 58.2
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.9e-213 746.5 656 59.9
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.3e-213 745.7 673 59.0
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.3e-212 743.8 709 56.3
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.1e-211 740.7 681 59.0
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.1e-211 740.7 672 57.6
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.1e-211 739.2 653 58.0
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 4.0e-211 738.8 709 55.1
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 5.3e-211 738.4 669 58.3
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.3e-211 738.4 739 54.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 5.3e-211 738.4 729 54.7
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 9.0e-211 737.6 669 58.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 2.6e-210 736.1 717 55.9
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 3.4e-210 735.7 722 54.8
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 4.4e-210 735.3 662 58.3
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.8e-210 734.9 663 58.5
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 9.9e-210 734.2 666 58.7
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.3e-209 733.8 662 59.4
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-209 733.8 655 59.1
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 2.9e-209 732.6 662 58.6
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 8.4e-209 731.1 672 56.7
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-208 730.7 665 59.1
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 2.4e-208 729.6 669 58.6
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 3.2e-208 729.2 683 58.0
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 7.1e-208 728.0 658 57.0
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 2.1e-207 726.5 711 55.7
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.7e-206 723.4 677 58.2
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.0e-206 722.6 684 56.7
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.5e-205 720.3 681 58.1
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.5e-205 719.5 715 54.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 4.3e-205 718.8 691 56.7
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 7.4e-205 718.0 675 58.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 9.6e-205 717.6 686 56.0
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.2e-204 714.9 672 56.8
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 6.2e-204 714.9 684 56.0
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 9.0e-203 711.1 682 57.6
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 9.0e-203 711.1 668 56.6
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.2e-200 702.6 664 54.7
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 5.5e-200 701.8 657 56.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 6.0e-199 698.4 616 59.3
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 7.9e-199 698.0 666 55.0
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.0e-198 697.6 666 55.1
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-198 697.2 774 50.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.1e-197 694.1 682 55.0
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-197 693.7 660 55.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.5e-197 693.7 714 53.4
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.5e-197 693.7 682 54.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.8e-195 686.8 691 53.3
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 6.9e-195 684.9 685 53.3
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 4.9e-193 678.7 664 54.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 4.2e-192 675.6 701 52.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 5.1e-190 668.7 674 54.3
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.5e-189 667.2 674 55.0
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 6.3e-188 661.8 654 54.3
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.1e-187 661.0 648 54.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.4e-178 629.4 677 51.6
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.3e-177 627.5 679 51.8
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 6.5e-169 598.6 722 47.2
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.7e-164 582.8 675 49.5
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.2e-160 568.5 721 46.7
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 2.2e-145 520.4 695 42.7
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.9e-144 517.3 666 47.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.6e-141 506.9 679 43.4
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.4e-139 500.4 648 44.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.5e-104 384.8 522 40.2
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 7.3e-104 382.5 446 50.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 3.4e-101 373.6 307 57.7
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-99 368.6 491 40.1
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 7.6e-93 345.9 792 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.3e-84 318.5 458 38.9
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-36 158.7 115 67.0
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.6e-34 152.1 115 66.1
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 4.4e-32 144.1 370 30.8
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.4e-24 117.5 144 49.3
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 8.3e-23 113.2 185 38.9
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.9e-15 88.2 112 50.9
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.7e-15 87.8 112 50.9
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.7e-12 79.0 78 52.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.9e-11 75.5 39 94.9
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 7.3e-11 73.6 78 51.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-09 69.3 80 55.0
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.2e-08 66.2 59 61.0


User provided reference genes

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