Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 3.0e-287 991.1 483 100.0
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.4e-284 982.2 483 98.8
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 4.0e-276 954.1 484 95.5
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.2e-274 948.3 484 94.6
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 2.2e-274 948.3 492 93.7
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 6.4e-274 946.8 484 94.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 6.4e-274 946.8 484 94.8
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 6.4e-274 946.8 484 94.6
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.2e-273 944.1 483 94.6
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 9.3e-273 943.0 484 94.4
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 9.6e-270 932.9 482 94.0
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 3.7e-269 931.0 484 92.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 5.8e-267 923.7 484 92.1
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 9.9e-267 922.9 484 91.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 91.5
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.5
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 2.4e-265 918.3 484 90.7
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.4e-265 918.3 484 91.1
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.4e-265 918.3 481 91.5
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.2e-265 917.9 484 91.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.2e-265 917.9 484 90.1
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 89.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.3e-265 916.4 484 90.7
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 90.9
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.1e-264 915.2 476 91.8
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.7e-264 914.8 481 91.7
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 90.7
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 4.6e-264 914.1 484 90.7
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.0e-264 913.7 484 90.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 7.9e-264 913.3 484 90.5
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.0e-263 912.9 484 90.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 89.9
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.8e-263 912.1 483 90.7
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 89.9
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.3e-263 911.8 482 91.1
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.0e-263 911.4 484 90.7
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 3.9e-263 911.0 484 90.5
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 5.1e-263 910.6 483 90.7
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 5.1e-263 910.6 484 90.3
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 5.1e-263 910.6 481 91.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 5.1e-263 910.6 484 90.3
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 5.1e-263 910.6 481 91.1
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 6.7e-263 910.2 476 92.4
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 8.7e-263 909.8 483 90.5
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.1e-262 909.4 489 90.2
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.5e-262 909.1 482 91.1
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.9e-262 908.7 484 90.3
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.5e-262 908.3 485 90.7
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 7.4e-262 906.7 483 89.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 9.6e-262 906.4 484 89.7
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.1e-261 905.2 478 91.0
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.7e-261 904.4 484 89.7
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 481 90.4
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.7e-261 904.4 481 90.4
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 6.2e-261 903.7 484 89.7
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 8.2e-261 903.3 481 90.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-260 902.9 480 91.2
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.8e-260 902.1 474 91.4
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.4e-260 901.7 484 90.3
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.4e-260 901.7 480 90.2
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.4e-260 901.7 484 90.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.1e-260 901.4 484 90.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 3.1e-260 901.4 453 94.5
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 3.1e-260 901.4 481 90.9
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 4.0e-260 901.0 482 90.0
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.0e-260 901.0 480 90.4
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 5.3e-260 900.6 484 90.1
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 6.9e-260 900.2 484 90.1
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 6.9e-260 900.2 484 90.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 6.9e-260 900.2 484 90.1
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.9e-260 900.2 481 90.6
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 6.9e-260 900.2 484 90.1
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 9.0e-260 899.8 484 90.1
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 9.0e-260 899.8 484 89.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 9.0e-260 899.8 481 90.4
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-259 899.4 484 90.1
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.5e-259 899.0 477 89.9
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 2.0e-259 898.7 484 89.0
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.6e-259 898.3 484 90.1
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.4e-259 897.9 483 90.1
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 3.4e-259 897.9 481 90.0
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.5e-259 897.5 480 90.4
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 5.8e-259 897.1 484 89.7
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.6e-259 896.7 484 89.9
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.0e-258 896.3 481 89.8
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.3e-258 896.0 484 89.5
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.1e-257 892.9 485 89.7
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-257 892.5 484 89.0
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.9e-257 892.1 486 89.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 2.5e-257 891.7 477 89.1
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 9.3e-257 889.8 486 88.1
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.2e-256 889.4 478 88.5
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.2e-256 889.4 481 89.0
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.1e-256 888.6 484 89.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.7e-256 888.3 481 89.6
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 2.7e-256 888.3 475 90.5
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 7.9e-256 886.7 481 87.9
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 3.0e-255 884.8 456 92.3
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 5.1e-255 884.0 481 88.4
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.1e-255 884.0 458 92.6
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 8.7e-255 883.2 480 89.2
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.5e-254 882.5 456 92.1
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.9e-254 882.1 480 89.0
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.3e-254 881.3 460 91.7
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 4.3e-254 880.9 460 91.7
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 6.3e-253 877.1 479 88.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.6e-251 871.7 456 91.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 2.7e-248 861.7 451 90.2
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 1.8e-247 859.0 478 86.8
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.7e-245 852.4 477 86.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-244 849.4 476 86.6
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 6.9e-244 847.0 488 83.6
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.4e-243 844.7 433 90.1
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.6e-240 835.9 475 83.2
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.0e-239 833.2 457 85.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.0e-239 831.6 434 88.5
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 5.7e-238 827.4 406 95.8
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.4e-236 822.0 408 93.9
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 7.7e-235 817.0 406 93.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.9e-234 815.1 405 93.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 5.0e-234 814.3 404 94.1
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.8e-228 795.8 433 85.5
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 8.8e-223 776.9 381 95.0
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.6e-222 775.4 478 79.5
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.1e-220 770.0 420 82.9
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 9.1e-220 766.9 427 82.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.3e-218 763.1 436 80.5
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 4.0e-215 751.5 392 90.8
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 8.6e-210 733.8 476 77.1
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.5e-209 730.3 390 91.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.0e-191 671.8 346 91.6
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 6.4e-189 664.5 365 88.5
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.7e-181 638.6 395 72.9
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-180 636.3 482 69.5
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.8e-175 619.8 313 92.0
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.4e-172 609.4 484 67.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.2e-172 609.0 482 67.4
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.3e-170 602.8 482 67.2
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.7e-165 586.6 331 87.0
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.9e-149 531.9 279 89.6
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.4e-141 504.6 351 72.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-124 451.1 275 74.2
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.5e-113 414.1 203 96.1
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.7e-97 359.0 180 90.6
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.2e-96 357.1 191 86.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.3e-90 337.0 170 91.8
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.7e-89 332.4 171 88.9
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.9e-85 319.7 481 43.0
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 3.1e-74 283.5 146 87.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.3e-69 267.3 146 87.7
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.1e-66 258.5 145 89.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.1e-63 248.4 125 93.6
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.1e-62 244.2 127 84.3
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.5e-57 228.0 144 82.6
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.4e-55 220.7 284 41.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 2.8e-51 207.2 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-51 206.5 102 95.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.0e-50 202.2 124 84.7
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.0e-37 160.6 105 75.2
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 3.1e-34 150.6 109 71.6
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 4.0e-34 150.2 77 92.2
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.0e-34 150.2 77 92.2
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 6.7e-29 132.9 147 47.6
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.1e-28 132.1 69 92.8
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.3e-28 130.6 69 88.4
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.7e-28 129.8 70 87.1
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-26 124.8 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-26 124.8 65 89.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-25 122.1 66 86.4
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-25 120.9 66 84.8
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.5e-22 110.5 83 67.5
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.3e-21 108.6 67 71.6
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 3.3e-20 104.0 47 97.9
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.1e-15 89.0 168 36.3
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.1e-12 79.0 71 52.1
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 9.7e-12 75.9 72 51.4
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.2e-11 74.7 72 51.4
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.4e-10 72.0 59 81.4
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 4.5e-09 67.0 61 52.5
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.2e-07 60.8 59 62.7
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 7.9e-06 56.2 38 68.4


User provided reference genes

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