Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 2218.7 1116 100.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1930.6 1125 88.0
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1923.3 1124 88.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1848.2 1125 84.4
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1830.8 1055 87.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1804.3 1125 82.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1132 81.5
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1793.1 1118 82.1
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1773.8 1074 83.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1772.7 1133 78.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1770.7 1134 78.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1761.5 1133 78.2
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1755.0 1124 78.3
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1751.5 1130 78.1
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1750.7 1123 78.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1748.4 1122 78.6
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1120 79.2
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1733.8 1126 78.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1729.9 1120 77.2
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1728.4 1128 76.8
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1130 78.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1122 77.5
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1123 77.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1121 78.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1130 77.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1718.0 1127 76.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1117 77.4
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1716.4 1139 77.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1122 76.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1125 77.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1131 76.8
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1709.9 1119 76.5
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1704.5 1133 76.3
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1698.7 1124 76.6
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1140 76.4
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1695.2 1132 75.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1690.2 1047 79.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1689.9 1073 78.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1687.2 1145 75.6
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1167 73.8
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1124 75.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1134 74.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1672.9 1129 75.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1670.2 1115 74.5
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1120 74.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1078 78.0
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1663.3 1128 74.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1117 74.3
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1132 74.6
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1122 75.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1119 74.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1654.4 1133 73.2
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1654.4 1220 70.5
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1120 74.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1119 74.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1120 74.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1116 73.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1124 74.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1118 74.0
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1637.5 1141 72.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1123 72.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1627.8 1130 72.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1042 76.6
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1121 71.8
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1100 72.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 951 85.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 1117 72.6
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1100 72.9
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1042 75.4
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1042 75.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1126 72.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1041 75.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1118 72.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1119 72.3
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1042 75.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1108 72.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1601.6 1116 72.0
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1117 72.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1047 75.3
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1117 72.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1129 71.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1043 75.4
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1208 68.3
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1047 75.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1121 71.5
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1119 71.6
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1594.7 1120 72.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1119 71.8
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1017 76.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1119 71.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1590.1 1057 74.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1022 76.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1023 76.1
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1582.8 1033 75.7
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1582.0 1022 75.8
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1136 71.2
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1579.7 1042 74.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 1235 66.2
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1057 73.6
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1048 74.2
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1091 72.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1560.4 1019 75.9
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1107 70.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1557.3 1124 71.1
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1547.7 1107 71.0
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 1165 68.2
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1531.5 1152 69.1
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1478.0 1122 69.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1474.9 906 80.2
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1468.4 1006 72.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1442.9 801 89.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1438.3 1040 67.1
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 1063 68.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1409.0 1073 64.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1385.2 981 68.8
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1364.4 1140 65.0
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1362.4 1140 64.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1260.0 1024 60.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1249.2 1096 60.2
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1179.5 748 77.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1167.9 888 67.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1163.3 789 76.0
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1140.6 722 77.6
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1101.7 1018 53.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1101.3 1113 51.3
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.1e-308 1063.5 739 71.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-308 1062.8 1036 52.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.4e-294 1015.4 921 59.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.0e-271 938.7 885 57.6
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.7e-265 918.3 777 58.8
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.9e-259 897.9 596 75.2
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.8e-256 889.4 619 70.4
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-238 828.9 1009 43.2
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-214 750.7 671 56.8
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.9e-212 743.8 642 60.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.2e-202 709.1 623 57.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.7e-195 686.0 471 73.5
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.4e-176 622.5 531 63.1
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.5e-172 611.3 408 73.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 5.6e-172 609.4 465 68.0
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.1e-167 592.4 540 62.6
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 8.1e-163 578.9 346 85.0
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-152 545.4 515 61.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 3.5e-150 537.0 393 63.9
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.0e-149 535.4 443 62.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 5.5e-135 486.5 397 62.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.4e-130 471.1 309 73.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.5e-129 467.2 329 68.1
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.8e-117 428.3 445 54.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.1e-103 382.5 985 29.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.9e-101 372.9 1004 27.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.3e-99 369.0 983 27.8
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.2e-99 368.2 226 78.8
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.0e-96 357.1 251 73.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.3e-87 327.4 945 28.3
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.5e-73 281.2 191 70.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.2e-58 231.5 332 38.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.5e-57 228.0 222 53.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 6.0e-57 227.3 868 23.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 5.6e-55 220.7 310 44.5
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 5.6e-47 194.1 124 78.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.1e-46 192.2 220 54.1
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.0e-43 183.3 192 51.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.2e-41 176.4 144 61.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-39 169.9 113 68.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.6e-38 166.0 307 35.2
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.6e-36 158.7 125 65.6
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.9e-35 155.2 149 55.7
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-31 143.3 155 45.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.8e-30 137.9 504 24.8
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.6e-25 121.3 111 53.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.3e-24 119.0 466 23.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 5.1e-24 117.9 132 53.8
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.7e-22 111.7 154 47.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.5e-20 106.3 278 25.9
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.2e-17 96.7 69 71.0
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.0e-16 92.0 173 43.9
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.4e-15 87.4 83 54.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 4.5e-12 78.2 130 40.8
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 7.7e-12 77.4 56 66.1
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 4.2e-10 71.6 45 71.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 3.0e-08 65.5 36 86.1
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-08 65.1 77 45.5
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 1.3e-06 60.1 42 69.0


User provided reference genes

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