Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 1.6e-135 486.1 250 100.0
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 2.3e-110 402.5 252 85.3
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 9.6e-72 274.2 301 60.1
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 7.6e-69 264.6 301 56.8
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 4.6e-50 202.2 305 50.2
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 7.9e-50 201.4 314 47.5
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 3.7e-47 192.6 295 51.9
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 4.8e-47 192.2 331 44.7
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 6.3e-47 191.8 282 50.7
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.4e-46 189.9 323 47.4
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 3.1e-46 189.5 307 48.2
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 7.2e-43 178.3 285 50.2
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 2.7e-42 176.4 296 46.6
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 4.6e-42 175.6 334 43.7
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 1.0e-41 174.5 277 48.7
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 3.0e-41 172.9 224 54.9
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 2.4e-38 163.3 323 40.2
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 6.9e-38 161.8 188 60.1
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.4e-35 154.1 325 40.6
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 2.5e-35 153.3 323 41.2
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 9.4e-35 151.4 325 38.5
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.2e-34 151.0 331 39.9
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 1.6e-34 150.6 317 38.5
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 6.1e-34 148.7 327 38.5
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.5e-32 144.1 327 38.5
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 2.6e-32 143.3 324 39.2
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 3.3e-32 142.9 311 40.2
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 4.4e-32 142.5 330 37.0
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 7.4e-32 141.7 330 37.6
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 7.4e-32 141.7 324 38.0
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 9.7e-32 141.4 323 40.6
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.3e-31 141.0 331 36.3
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 2.2e-31 140.2 258 41.1
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 4.8e-31 139.0 330 37.6
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 3.1e-30 136.3 324 37.7
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 3.1e-30 136.3 332 36.1
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 4.1e-30 136.0 244 38.9
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 5.3e-30 135.6 314 36.3
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 2.0e-29 133.7 238 39.1
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 2.6e-29 133.3 327 38.8
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 3.5e-29 132.9 330 36.7
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 5.9e-29 132.1 327 36.1
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 5.9e-29 132.1 303 37.3
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 1.7e-28 130.6 340 36.2
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.2e-28 130.2 329 33.4
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 3.8e-28 129.4 333 36.0
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.5e-27 127.5 324 36.4
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.5e-27 127.5 324 36.4
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.5e-27 127.5 320 35.3
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.5e-27 126.7 327 35.8
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 4.2e-27 125.9 326 35.3
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 5.5e-27 125.6 312 38.5
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 7.2e-27 125.2 329 36.8
Psat4g227520 Pisum sativum HOM05D006273 ORTHO05D007607 3.6e-26 122.9 203 47.3
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 6.1e-26 122.1 280 37.5
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 8.0e-26 121.7 232 40.5
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 1.8e-25 120.6 328 35.7
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 1.8e-25 120.6 272 34.9
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 2.3e-25 120.2 278 37.8
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 6.7e-25 118.6 329 33.4
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 2.6e-24 116.7 337 32.6
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 2.2e-23 113.6 228 37.7
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 2.8e-23 113.2 323 34.7
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 2.8e-23 113.2 232 36.2
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 3.7e-23 112.8 204 43.1
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 1.4e-22 110.9 276 38.0
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 9.1e-22 108.2 317 34.1
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 2.0e-21 107.1 329 32.8
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 2.0e-21 107.1 200 43.5
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 5.9e-21 105.5 321 32.7
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.0e-20 104.8 225 36.4
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 1.3e-20 104.4 274 37.2
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 1.7e-20 104.0 321 32.4
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 3.8e-20 102.8 272 32.4
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 3.8e-20 102.8 221 41.2
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 5.0e-20 102.4 305 33.4
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 2.5e-19 100.1 224 34.8
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.2e-18 97.8 135 45.9
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 3.6e-18 96.3 271 35.8
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 3.6e-18 96.3 273 33.7
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 4.7e-18 95.9 227 33.5
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 8.0e-18 95.1 292 33.6
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 1.0e-17 94.7 307 34.2
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 1.4e-17 94.4 216 36.6
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.8e-17 94.0 232 34.1
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 3.0e-17 93.2 227 35.2
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 5.7e-16 89.0 223 33.2
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 9.8e-16 88.2 236 32.2
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.4e-14 84.3 137 43.8
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 1.8e-14 84.0 290 29.7
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.8e-14 84.0 300 33.3
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 4.5e-13 79.3 293 32.8
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 5.9e-13 79.0 233 31.3
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.0e-12 78.2 264 31.4
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 2.3e-12 77.0 174 36.2
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 6.5e-12 75.5 209 34.9
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 5.5e-11 72.4 258 29.5
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 1.6e-10 70.9 266 33.5
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 1.6e-10 70.9 263 30.8
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 2.1e-10 70.5 213 33.3
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 2.1e-10 70.5 275 31.3
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 3.6e-10 69.7 302 32.1
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 1.8e-09 67.4 284 29.6
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.8e-09 67.4 307 29.0
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.8e-09 67.4 297 27.3
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 1.8e-09 67.4 285 29.1
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 3.0e-09 66.6 186 31.7
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.5e-08 64.3 143 35.7
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 2.0e-08 63.9 183 37.2
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 4.4e-08 62.8 236 32.2
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 5.7e-08 62.4 255 31.4
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 9.8e-08 61.6 199 28.6
Medtr5g005040 Medicago truncatula HOM05D006273 ORTHO05D007607 9.8e-08 61.6 152 36.2
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 4.9e-07 59.3 132 39.4
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 6.3e-07 58.9 219 30.6
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.4e-06 57.8 179 33.5
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 5.4e-06 55.8 165 35.2


User provided reference genes

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