Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.3e-25 118.2 66 100.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.8e-17 90.1 53 94.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 8.9e-17 89.7 56 92.9
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.2e-16 89.4 56 92.9
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 4.4e-16 87.4 56 92.9
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 4.9e-15 84.0 58 86.2
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.4e-14 82.4 56 82.1
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.4e-14 82.4 55 85.5
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.8e-14 82.0 56 82.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 55 81.8
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 55 81.8
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.1e-14 81.3 55 83.6
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.1e-14 81.3 55 83.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.1e-14 80.9 56 82.1
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 4.1e-14 80.9 55 83.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 4.1e-14 80.9 55 83.6
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.1e-14 80.9 55 80.0
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.1e-14 80.9 56 83.9
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.2e-14 79.7 56 82.1
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 9.2e-14 79.7 55 83.6
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.2e-13 79.3 56 83.9
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.2e-13 79.3 55 83.6
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-13 79.3 56 82.1
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.2e-13 79.3 55 83.6
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.6e-13 79.0 52 88.5
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-13 79.0 55 83.6
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-13 79.0 56 82.1
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.6e-13 79.0 56 82.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.6e-13 79.0 55 83.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.7e-13 78.2 55 81.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 2.7e-13 78.2 55 80.0
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 2.7e-13 78.2 55 81.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.5e-13 77.8 56 80.4
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 3.5e-13 77.8 55 81.8
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.5e-13 77.8 56 80.4
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 3.5e-13 77.8 56 80.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.5e-13 77.4 55 81.8
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.5e-13 77.4 56 76.8
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 4.5e-13 77.4 55 81.8
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.5e-13 77.4 55 81.8
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.5e-13 77.4 55 81.8
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 4.5e-13 77.4 55 81.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 5.9e-13 77.0 55 80.0
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.9e-13 77.0 56 80.4
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.9e-13 77.0 56 80.4
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.8e-13 76.6 56 76.8
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.8e-13 76.6 56 78.6
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.8e-13 76.6 55 80.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.0e-12 76.3 55 81.8
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.0e-12 76.3 56 78.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.0e-12 76.3 59 78.0
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.0e-12 76.3 59 78.0
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.3e-12 75.9 55 80.0
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.3e-12 75.9 57 78.9
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.7e-12 75.5 55 80.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.7e-12 75.5 55 80.0
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.7e-12 75.5 55 80.0
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.7e-12 75.5 56 78.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.3e-12 75.1 55 78.2
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 2.3e-12 75.1 55 78.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.3e-12 75.1 55 78.2
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.9e-12 74.7 60 76.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.9e-12 74.7 56 76.8
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.9e-12 74.7 56 76.8
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.9e-12 74.7 56 76.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.9e-12 74.3 56 78.6
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.9e-12 74.3 55 78.2
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-12 74.3 56 73.2
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-12 74.3 56 73.2
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 3.9e-12 74.3 55 76.4
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.9e-12 74.3 55 76.4
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 5.0e-12 73.9 55 80.0
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.0e-12 73.9 55 74.5
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.0e-12 73.9 55 76.4
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.6e-12 73.6 55 76.4
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 6.6e-12 73.6 56 75.0
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 6.6e-12 73.6 56 75.0
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 8.6e-12 73.2 54 79.6
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.1e-11 72.8 57 78.9
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.5e-11 72.4 54 79.6
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.9e-11 72.0 61 73.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 8.0e-10 66.6 59 71.2
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 3.1e-09 64.7 56 64.3
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 5.2e-09 63.9 51 72.5
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.2e-09 63.9 56 67.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 6.8e-09 63.5 54 70.4
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.8e-09 63.5 56 66.1
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 8.9e-09 63.2 64 65.6
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.2e-08 62.8 54 66.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.2e-08 62.8 58 63.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.2e-08 62.8 56 66.1
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.5e-08 62.4 56 64.3
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-08 62.4 51 68.6
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.5e-08 62.4 51 68.6
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.6e-08 61.6 56 64.3
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.6e-08 61.6 56 66.1
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 3.4e-08 61.2 56 64.3
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 3.4e-08 61.2 56 64.3
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 4.4e-08 60.8 56 66.1
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 4.4e-08 60.8 56 66.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 5.8e-08 60.5 56 66.1
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 5.8e-08 60.5 56 66.1
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 5.8e-08 60.5 56 66.1
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 5.8e-08 60.5 56 60.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.5e-08 60.1 56 64.3
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 9.8e-08 59.7 56 62.5
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 9.8e-08 59.7 54 66.7
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-07 59.3 56 62.5
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-07 59.3 56 62.5
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.7e-07 58.9 56 62.5
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.2e-07 58.5 60 60.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.9e-07 58.2 56 60.7
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.7e-07 57.8 56 62.5
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.7e-07 57.8 56 62.5
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 4.9e-07 57.4 56 62.5
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 4.9e-07 57.4 56 64.3
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.9e-07 57.4 52 67.3
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 6.4e-07 57.0 56 62.5
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.4e-07 57.0 56 62.5
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 8.3e-07 56.6 56 60.7
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.3e-07 56.6 57 63.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.3e-07 56.6 56 62.5
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-06 56.2 56 62.5
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-06 56.2 56 62.5
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-06 56.2 57 61.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 57 61.4
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.1e-06 56.2 54 64.8
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-06 56.2 57 59.6
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.9e-06 55.5 56 60.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.9e-06 55.5 56 64.3
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.2e-06 54.7 65 56.9
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.2e-06 54.7 65 56.9
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.2e-06 54.7 56 60.7
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 3.2e-06 54.7 56 62.5
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.4e-06 53.9 56 58.9
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 7.0e-06 53.5 57 56.1
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 7.0e-06 53.5 54 59.3


User provided reference genes

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