Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 1.1e-95 353.6 226 100.0
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 3.2e-34 149.4 191 56.5
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 1.1e-26 124.4 111 67.6
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 2.5e-26 123.2 98 65.3
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 3.0e-24 116.3 174 46.0
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 5.7e-23 112.1 99 60.6
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 7.5e-23 111.7 104 59.6
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 7.5e-23 111.7 104 59.6
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 8.2e-22 108.2 183 41.5
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 8.2e-22 108.2 183 41.5
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 1.8e-21 107.1 102 57.8
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 7.0e-21 105.1 112 54.5
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.6e-20 104.0 109 56.0
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 2.0e-20 103.6 100 58.0
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 4.5e-20 102.4 109 52.3
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 4.5e-20 102.4 98 60.2
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 5.9e-20 102.1 100 57.0
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 5.9e-20 102.1 103 55.3
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 5.9e-20 102.1 103 55.3
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 5.9e-20 102.1 103 55.3
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 7.7e-20 101.7 109 51.4
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 1.0e-19 101.3 98 54.1
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 1.0e-19 101.3 98 54.1
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 1.3e-19 100.9 104 54.8
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-19 100.5 103 54.4
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 1.7e-19 100.5 103 54.4
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 1.7e-19 100.5 103 54.4
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 1.7e-19 100.5 103 54.4
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.2e-19 100.1 98 53.1
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 2.9e-19 99.8 100 55.0
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 2.9e-19 99.8 100 54.0
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 3.8e-19 99.4 98 55.1
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 3.8e-19 99.4 99 55.6
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 3.8e-19 99.4 109 52.3
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 5.0e-19 99.0 103 54.4
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 5.0e-19 99.0 96 55.2
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 6.5e-19 98.6 93 52.7
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 6.5e-19 98.6 102 54.9
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 6.5e-19 98.6 95 56.8
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 1.5e-18 97.4 104 52.9
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 1.5e-18 97.4 104 52.9
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 1.5e-18 97.4 111 47.7
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 1.9e-18 97.1 101 53.5
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 1.9e-18 97.1 101 53.5
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 3.2e-18 96.3 102 56.9
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 4.2e-18 95.9 101 55.4
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 5.5e-18 95.5 103 53.4
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 5.5e-18 95.5 73 60.3
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.6e-17 94.0 103 53.4
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.6e-17 94.0 103 53.4
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.6e-17 94.0 96 52.1
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 2.1e-17 93.6 108 49.1
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 2.7e-17 93.2 96 50.0
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 2.7e-17 93.2 115 47.8
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 2.7e-17 93.2 106 47.2
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.1e-17 92.0 110 49.1
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 6.1e-17 92.0 114 43.9
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 1.4e-16 90.9 100 45.0
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 1.4e-16 90.9 106 51.9
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.8e-16 90.5 106 51.9
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.8e-16 90.5 110 49.1
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 1.8e-16 90.5 84 58.3
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 3.0e-16 89.7 106 49.1
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 3.0e-16 89.7 120 43.3
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 3.0e-16 89.7 117 41.9
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 3.0e-16 89.7 114 43.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 4.0e-16 89.4 94 50.0
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.8e-16 88.6 110 48.2
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 8.8e-16 88.2 117 41.0
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 8.8e-16 88.2 93 49.5
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 1.5e-15 87.4 110 46.4
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.5e-15 87.4 97 47.4
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.5e-15 87.4 93 48.4
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 2.0e-15 87.0 110 46.4
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 2.6e-15 86.7 115 43.5
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 2.6e-15 86.7 93 49.5
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 3.4e-15 86.3 101 45.5
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 3.4e-15 86.3 102 46.1
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 4.4e-15 85.9 95 52.6
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 5.7e-15 85.5 119 42.9
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 7.5e-15 85.1 106 45.3
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 1.3e-14 84.3 97 43.3
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 1.7e-14 84.0 103 41.7
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 1.7e-14 84.0 100 44.0
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 2.2e-14 83.6 92 52.2
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 2.2e-14 83.6 106 44.3
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 4.8e-14 82.4 105 44.8
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 8.3e-14 81.6 101 50.5
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 5.4e-13 79.0 101 45.5
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 5.4e-13 79.0 116 37.9
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 9.1e-13 78.2 116 37.9
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 2.7e-12 76.6 111 43.2
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 1.3e-11 74.3 105 41.0
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 1.5e-10 70.9 105 42.9
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 1.0e-08 64.7 75 46.7
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.0e-08 64.7 85 47.1
TAR633G1834 Trochodendron aralioides HOM05D007411 ORTHO05D009025 5.7e-07 58.9 73 45.2
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 7.5e-07 58.5 51 54.9
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 1.7e-06 57.4 91 35.2
FvH4_3g16330 Fragaria vesca HOM05D018240 ORTHO05D025480 2.8e-06 56.6 51 56.9
SEGI_16230 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 6.3e-06 55.5 88 36.4


User provided reference genes

Program Settings