Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.2e-61 239.6 117 100.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.7e-58 229.2 118 95.8
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.2e-56 223.0 117 90.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-56 221.9 117 90.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.3e-55 219.5 118 90.7
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.2e-55 218.8 117 89.7
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.5e-55 217.2 118 89.8
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.1e-54 216.5 117 87.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 4.2e-54 214.5 117 85.5
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 4.2e-54 214.5 117 86.3
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 5.5e-54 214.2 116 85.3
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.2e-53 213.0 116 85.3
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 84.6
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.7e-53 211.8 117 84.6
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.7e-53 211.8 116 84.5
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.6e-53 211.5 116 85.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 3.6e-53 211.5 115 84.3
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 85.3
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 85.3
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 85.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.4e-52 209.5 116 84.5
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 87.0
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.3e-52 208.8 117 86.3
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.3e-52 208.8 113 87.6
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 3.0e-52 208.4 117 83.8
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.2e-52 207.6 114 86.0
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 8.8e-52 206.8 116 82.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.8e-52 206.8 116 82.8
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.2e-51 206.5 114 85.1
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 83.6
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.2e-51 206.5 115 83.5
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.2e-51 206.5 115 83.5
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.2e-51 206.5 115 83.5
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 81.7
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 82.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.5e-51 206.1 114 86.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.0e-51 205.7 115 81.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.3e-51 204.9 116 81.9
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 81.9
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 81.9
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 76.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.7e-51 204.1 116 85.3
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.7e-51 204.1 117 82.1
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 5.7e-51 204.1 117 82.1
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 5.7e-51 204.1 117 82.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 5.7e-51 204.1 116 81.9
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.7e-51 203.4 116 81.9
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 83.6
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 83.6
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 83.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 79.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.8e-50 201.8 116 81.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.8e-50 201.8 116 81.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.7e-50 201.4 116 81.0
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 4.8e-50 201.1 114 80.7
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 6.3e-50 200.7 118 81.4
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.2e-50 200.3 115 82.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 82.6
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 78.4
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-49 199.1 119 81.5
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-49 199.1 119 81.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.4e-49 198.7 115 81.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.1e-49 198.0 114 79.8
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 5.3e-49 197.6 116 79.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.3e-49 197.6 115 79.1
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.3e-49 197.6 127 76.4
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.0e-49 197.2 114 79.8
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 7.0e-49 197.2 118 78.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 78.6
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 78.6
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 78.6
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 78.6
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 78.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-48 196.4 119 79.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 78.4
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 4.5e-48 194.5 123 78.0
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 4.5e-48 194.5 117 77.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 7.7e-48 193.7 112 80.4
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 73.5
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 76.7
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.2e-47 192.2 119 78.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.9e-47 191.8 116 77.6
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 5.0e-47 191.0 128 71.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.5e-47 190.7 114 78.1
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 8.5e-47 190.3 114 78.1
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 8.5e-47 190.3 114 78.1
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 8.5e-47 190.3 114 78.1
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 8.5e-47 190.3 114 78.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.1e-46 189.9 113 78.8
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 77.2
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 77.2
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 77.2
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 77.2
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 77.2
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 4.2e-46 188.0 114 76.3
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 4.2e-46 188.0 114 76.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 4.2e-46 188.0 100 94.0
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 5.5e-46 187.6 114 79.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.5e-46 187.6 112 77.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 7.2e-46 187.2 114 77.2
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 7.2e-46 187.2 114 76.3
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 9.4e-46 186.8 117 70.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.2e-45 186.4 114 77.2
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.2e-45 186.4 114 75.4
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.2e-45 186.4 114 75.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.6e-45 186.0 114 76.3
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.7e-45 185.3 114 77.2
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.6e-45 184.9 115 72.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 4.7e-45 184.5 167 57.5
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 75.2
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.8e-44 182.6 113 79.6
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.5e-43 179.5 98 88.8
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.5e-43 179.5 98 88.8
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.4e-43 178.3 115 68.7
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.4e-43 178.3 115 68.7
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 5.7e-43 177.6 117 76.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 7.5e-43 177.2 117 70.1
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.3e-42 176.4 117 70.9
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 4.8e-42 174.5 116 73.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.8e-41 172.6 99 82.8
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 9.1e-41 170.2 96 84.4
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.6e-40 169.5 112 72.3
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-40 169.5 97 81.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-40 168.7 130 64.6
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 3.5e-40 168.3 97 80.4
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 3.8e-39 164.9 119 72.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.2e-38 161.4 121 67.8
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.0e-36 156.8 101 71.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 9.8e-35 150.2 114 57.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.3e-34 149.8 110 60.0
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.7e-34 148.3 97 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.4e-33 144.4 112 57.1
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.2e-32 143.3 100 69.0
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 4.5e-32 141.4 114 56.1
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 5.9e-32 141.0 98 68.4
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 6.6e-31 137.5 95 69.5
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 4.6e-24 114.8 61 88.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 4.6e-24 114.8 116 51.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.0e-23 113.6 64 81.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.7e-23 112.8 63 84.1
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-23 112.5 58 89.7
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-22 110.2 64 76.6
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-22 109.8 59 84.7
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.5e-22 109.8 61 82.0
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.9e-22 109.4 71 77.5
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 5.6e-22 107.8 56 87.5
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 2.1e-21 105.9 158 41.8
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 3.6e-21 105.1 64 78.1
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 8.0e-21 104.0 59 83.1
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.4e-20 103.2 54 88.9
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 8.9e-20 100.5 118 49.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.2e-19 100.1 52 88.5
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 3.4e-19 98.6 53 84.9
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.3e-18 96.7 131 42.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.7e-18 96.3 136 39.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 8.3e-18 94.0 50 84.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-17 93.6 51 80.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.6e-11 72.4 75 57.3
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 4.4e-11 71.6 70 50.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.2e-08 63.5 35 85.7
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.9e-07 58.5 100 43.0


User provided reference genes

Program Settings