Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 2.1e-64 248.8 123 100.0
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 5.8e-62 240.7 121 97.5
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 2.5e-57 225.3 121 90.9
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 4.3e-57 224.6 121 90.9
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 9.0e-55 216.9 121 87.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.9e-52 209.1 119 84.0
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.9e-52 209.1 123 85.4
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 3.2e-52 208.4 124 83.1
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 7.1e-52 207.2 127 81.1
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.6e-51 206.1 121 86.0
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 7.8e-51 203.8 119 83.2
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.3e-50 203.0 118 83.1
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.3e-50 202.2 118 82.2
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 3.9e-50 201.4 121 83.5
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.9e-50 201.4 119 78.2
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.7e-50 200.3 117 80.3
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 1.5e-49 199.5 117 81.2
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-49 199.5 118 81.4
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.5e-49 199.5 118 81.4
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.3e-49 198.0 117 81.2
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 7.3e-49 197.2 117 80.3
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 9.6e-49 196.8 117 78.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.6e-48 196.1 117 77.8
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.6e-48 196.1 117 79.5
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 2.1e-48 195.7 119 76.5
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.8e-48 195.3 118 78.8
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.6e-48 194.9 117 79.5
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 6.2e-48 194.1 116 75.9
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 6.2e-48 194.1 106 87.7
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 6.2e-48 194.1 118 80.5
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 8.1e-48 193.7 117 81.2
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.4e-47 193.0 135 70.4
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.8e-47 192.6 118 76.3
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.8e-47 192.6 117 79.5
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 3.1e-47 191.8 117 77.8
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 4.0e-47 191.4 117 77.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 5.3e-47 191.0 113 76.1
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 5.3e-47 191.0 113 76.1
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 5.3e-47 191.0 117 75.2
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 5.3e-47 191.0 117 76.9
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.9e-47 190.7 121 75.2
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 6.9e-47 190.7 117 76.9
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 9.0e-47 190.3 117 75.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 9.0e-47 190.3 117 75.2
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.2e-46 189.9 117 76.1
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.5e-46 189.5 119 76.5
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.6e-46 188.7 117 74.4
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 3.4e-46 188.3 117 74.4
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 3.4e-46 188.3 118 75.4
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 7.6e-46 187.2 106 81.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.3e-45 186.4 117 73.5
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 2.2e-45 185.7 116 73.3
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 2.9e-45 185.3 117 73.5
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 3.8e-45 184.9 117 73.5
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 3.8e-45 184.9 115 73.0
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 4.9e-45 184.5 120 73.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 4.9e-45 184.5 120 73.3
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 4.9e-45 184.5 117 74.4
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 4.9e-45 184.5 117 71.8
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 6.4e-45 184.1 104 81.7
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 6.4e-45 184.1 109 78.9
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 6.4e-45 184.1 105 81.0
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 8.4e-45 183.7 117 74.4
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 8.4e-45 183.7 104 82.7
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.9e-44 182.6 117 73.5
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.9e-44 182.6 139 65.5
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.4e-44 182.2 117 71.8
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 2.4e-44 182.2 117 70.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.4e-44 182.2 117 70.9
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 2.4e-44 182.2 120 73.3
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 3.2e-44 181.8 119 72.3
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 3.2e-44 181.8 128 71.9
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 4.2e-44 181.4 117 69.2
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 5.4e-44 181.0 117 69.2
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 5.4e-44 181.0 117 69.2
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 5.4e-44 181.0 118 68.6
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 5.4e-44 181.0 117 69.2
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.1e-44 180.6 117 70.1
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 7.1e-44 180.6 117 70.1
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.2e-43 179.9 118 68.6
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.6e-43 179.5 104 77.9
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 4.6e-43 177.9 116 69.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 6.0e-43 177.6 116 69.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 6.0e-43 177.6 116 69.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 6.0e-43 177.6 116 69.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 6.0e-43 177.6 116 69.0
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 7.9e-43 177.2 131 65.6
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.0e-42 176.8 112 73.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.8e-42 176.0 105 77.1
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 2.3e-42 175.6 116 69.0
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 3.9e-42 174.9 117 66.7
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 5.1e-42 174.5 117 68.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 5.1e-42 174.5 117 70.1
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 6.7e-42 174.1 116 68.1
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 6.7e-42 174.1 105 72.4
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 6.7e-42 174.1 105 72.4
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.1e-41 173.3 116 68.1
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.9e-41 172.6 110 72.7
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.5e-41 172.2 117 67.5
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 4.3e-41 171.4 118 71.2
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 4.3e-41 171.4 106 73.6
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 5.6e-41 171.0 107 72.9
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 4.8e-40 167.9 111 70.3
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 8.1e-40 167.2 118 66.1
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 3.4e-38 161.8 117 65.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 7.6e-38 160.6 133 62.4
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 2.2e-29 132.5 88 75.0
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 8.7e-26 120.6 83 69.9
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 3.4e-22 108.6 102 50.0
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 4.5e-22 108.2 63 74.6
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 1.0e-21 107.1 57 80.7
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.3e-21 106.7 59 79.7
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-21 106.7 63 77.8
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.3e-21 106.7 58 79.3
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 1.7e-21 106.3 102 49.0
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.7e-21 106.3 59 78.0
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.7e-21 106.3 58 81.0
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.7e-21 106.3 102 51.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.1e-20 103.6 59 84.7
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.9e-20 102.8 63 74.6
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 4.2e-20 101.7 60 85.0
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 3.6e-19 98.6 67 67.2
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.6e-19 98.6 59 81.4
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 4.6e-19 98.2 82 63.4
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.0e-18 97.1 71 67.6
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.5e-17 92.4 60 71.7
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.5e-17 92.4 57 77.2
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 4.3e-17 91.7 104 43.3
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.7e-16 89.7 59 72.9
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.2e-16 89.4 59 62.7
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.8e-16 89.0 58 60.3
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.4e-15 86.7 57 75.4
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 4.1e-15 85.1 63 63.5
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 9.1e-15 84.0 101 44.6
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 3.8e-13 78.6 53 71.7
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 3.8e-13 78.6 53 71.7
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 5.0e-13 78.2 99 43.4
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.1e-12 77.0 48 75.0
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-12 77.0 53 69.8
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 3.0e-10 68.9 55 49.1
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 3.4e-06 55.5 45 62.2
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 4.5e-06 55.1 36 63.9


User provided reference genes

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