Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 6.1e-166 587.4 299 100.0
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 2.8e-158 562.0 298 95.6
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 4.7e-158 561.2 298 96.3
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 1.3e-139 500.0 298 86.9
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 2.2e-139 499.2 298 86.2
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 4.9e-139 498.0 298 85.6
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 2.1e-137 492.7 298 85.2
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 4.6e-137 491.5 298 83.2
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 5.6e-135 484.6 293 84.6
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 2.1e-134 482.6 293 84.0
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 2.1e-134 482.6 293 84.0
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 3.1e-133 478.8 293 81.9
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.5e-124 449.9 299 77.3
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 2.4e-122 442.6 299 76.6
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 4.2e-122 441.8 300 77.0
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.6e-121 439.9 299 74.2
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 3.5e-121 438.7 299 75.3
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 7.8e-121 437.6 299 74.2
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.0e-120 437.2 299 74.2
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.0e-120 437.2 300 74.7
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 1.3e-120 436.8 300 74.3
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 5.1e-120 434.9 299 74.6
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.6e-120 434.5 299 75.3
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 2.5e-119 432.6 299 74.2
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 2.5e-119 432.6 300 75.7
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.3e-119 432.2 300 74.3
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 5.6e-119 431.4 300 75.0
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 9.6e-119 430.6 300 74.0
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 9.6e-119 430.6 295 75.3
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.3e-118 430.3 295 74.6
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 2.1e-118 429.5 301 74.1
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 2.1e-118 429.5 300 74.0
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.8e-118 429.1 294 75.5
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.8e-117 426.4 296 75.0
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.8e-117 426.4 299 74.6
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.4e-117 426.0 299 73.6
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.4e-117 426.0 299 74.6
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 6.9e-117 424.5 300 73.3
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.2e-116 423.7 299 74.9
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.2e-116 423.7 299 73.2
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 2.6e-116 422.5 298 73.2
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 2.6e-116 422.5 297 75.1
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 3.4e-116 422.2 308 71.8
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 7.6e-116 421.0 298 73.2
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 7.6e-116 421.0 299 73.6
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 1.3e-115 420.2 296 73.6
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.7e-115 419.9 298 73.2
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.2e-115 419.5 300 72.7
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.8e-115 418.7 314 70.1
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.1e-114 417.2 299 71.9
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 1.9e-114 416.4 298 73.5
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.9e-114 416.4 299 72.6
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.4e-114 416.0 299 71.2
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.2e-114 415.6 315 70.2
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 5.4e-114 414.8 300 72.3
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 5.4e-114 414.8 315 69.5
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 5.4e-114 414.8 298 72.1
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 9.3e-114 414.1 300 72.0
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 1.2e-113 413.7 298 73.5
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.1e-113 412.9 293 72.7
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 2.1e-113 412.9 298 72.1
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 2.1e-113 412.9 300 71.7
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 2.7e-113 412.5 296 73.0
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 3.5e-113 412.1 298 72.8
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 3.5e-113 412.1 294 71.8
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 6.0e-113 411.4 307 70.4
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 1.0e-112 410.6 300 71.0
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 1.3e-112 410.2 300 72.0
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 1.3e-112 410.2 298 71.5
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 3.9e-112 408.7 293 73.0
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 8.7e-112 407.5 299 71.6
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 8.7e-112 407.5 294 73.1
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 8.7e-112 407.5 294 73.1
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.1e-111 407.1 293 73.4
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 5.6e-111 404.8 299 69.6
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 1.6e-110 403.3 299 69.9
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.6e-110 403.3 300 70.0
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.7e-110 402.1 316 68.7
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 3.7e-110 402.1 293 70.0
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.1e-109 400.6 298 70.5
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 3.1e-109 399.1 298 70.5
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 4.0e-109 398.7 292 71.2
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.7e-107 393.3 293 68.9
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 4.9e-107 391.7 295 70.2
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 4.9e-107 391.7 298 68.8
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 6.4e-107 391.3 294 70.7
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 5.5e-106 388.3 293 68.3
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 9.3e-106 387.5 293 69.3
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 1.6e-105 386.7 287 72.5
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 7.9e-105 384.4 296 67.2
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 7.9e-105 384.4 295 66.4
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.8e-104 383.3 294 68.4
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 8.7e-104 380.9 294 67.7
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.5e-103 380.2 298 70.1
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 7.4e-103 377.9 295 66.4
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 9.6e-103 377.5 299 67.2
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.8e-102 375.2 299 67.2
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 1.1e-101 374.0 292 67.1
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.4e-101 373.6 201 93.5
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.4e-101 372.9 299 67.6
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 3.1e-101 372.5 295 66.1
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 3.1e-101 372.5 294 65.6
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 3.1e-101 372.5 294 66.0
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 6.9e-101 371.3 294 65.6
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 2.6e-100 369.4 294 65.6
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 3.8e-99 365.5 297 65.7
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 1.1e-98 364.0 294 63.9
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 2.5e-98 362.8 294 65.0
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 3.9e-96 355.5 298 65.4
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 8.7e-96 354.4 293 64.2
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 8.7e-96 354.4 295 64.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 8.7e-96 354.4 295 64.1
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.9e-95 353.2 293 64.8
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 9.7e-95 350.9 295 63.7
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 9.7e-95 350.9 295 63.7
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 4.1e-93 345.5 247 72.9
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 2.9e-83 312.8 307 59.0
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 3.8e-83 312.4 296 59.5
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 1.6e-81 307.0 304 55.3
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 7.9e-81 304.7 302 57.3
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.1e-77 294.3 310 53.2
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 5.3e-77 292.0 309 53.4
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 2.5e-74 283.1 323 51.4
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 1.6e-73 280.4 300 54.3
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 6.3e-70 268.5 226 62.8
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 3.2e-66 256.1 293 51.5
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 4.4e-63 245.7 290 49.7
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 7.0e-61 238.4 306 45.4
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 1.2e-60 237.7 245 55.1
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.7e-59 233.8 172 72.7
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.0e-51 208.0 284 44.7
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.2e-44 184.5 139 65.5
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.0e-39 167.2 149 57.0
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 2.9e-38 163.3 194 51.0
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 1.3e-30 137.9 100 66.0
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 7.8e-28 128.6 260 36.9
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 4.6e-20 102.8 106 51.9
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 2.4e-16 90.5 91 57.1
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 3.1e-16 90.1 89 52.8
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 6.4e-14 82.4 152 34.2


User provided reference genes

Program Settings