Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 8.6e-99 363.6 179 100.0
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 4.0e-88 328.2 180 91.7
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 6.9e-64 247.7 142 90.8
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 1.2e-63 246.9 142 90.8
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 2.4e-56 222.6 142 83.1
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 1.5e-55 219.9 142 81.0
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 5.5e-53 211.5 142 78.2
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 5.5e-53 211.5 142 78.2
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 1.9e-50 203.0 142 74.6
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.2e-49 199.5 142 73.9
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 4.8e-49 198.4 132 78.0
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 4.8e-49 198.4 132 76.5
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 6.3e-49 198.0 143 75.5
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.1e-48 197.2 142 73.9
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.1e-48 197.2 142 72.5
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.4e-48 196.8 142 71.8
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-48 196.8 142 71.8
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-48 196.8 142 71.8
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-48 196.8 142 71.8
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 1.4e-48 196.8 142 75.4
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.8e-48 196.4 142 70.4
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.8e-48 196.4 142 74.6
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.4e-48 196.1 142 73.2
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 2.4e-48 196.1 142 73.2
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 3.1e-48 195.7 142 71.8
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.1e-48 195.3 132 76.5
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 5.3e-48 194.9 142 72.5
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 6.9e-48 194.5 142 72.5
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 6.9e-48 194.5 132 77.3
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 9.0e-48 194.1 142 72.5
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.2e-47 193.7 142 72.5
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.4e-47 192.2 131 74.8
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 7.7e-47 191.0 142 71.8
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.0e-46 190.7 142 71.1
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.3e-46 190.3 143 72.0
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.7e-46 189.9 142 69.7
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.2e-46 189.5 142 69.7
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.9e-46 189.1 150 68.0
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 2.9e-46 189.1 142 69.7
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.8e-46 188.7 142 70.4
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 3.8e-46 188.7 142 68.3
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 5.0e-46 188.3 142 69.0
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 5.0e-46 188.3 142 70.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 5.0e-46 188.3 142 69.0
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 6.5e-46 188.0 142 70.4
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 8.5e-46 187.6 132 67.4
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 8.5e-46 187.6 142 70.4
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 8.5e-46 187.6 142 66.2
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.4e-45 186.8 142 67.6
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 1.4e-45 186.8 142 69.0
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.5e-45 186.0 142 69.7
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 2.5e-45 186.0 142 68.3
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 3.2e-45 185.7 142 69.0
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 5.5e-45 184.9 142 64.8
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 7.2e-45 184.5 142 68.3
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 1.2e-44 183.7 142 66.2
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.2e-44 183.7 142 69.0
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 1.6e-44 183.3 155 63.9
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 1.6e-44 183.3 142 69.7
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 2.1e-44 183.0 144 68.1
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 2.1e-44 183.0 142 68.3
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 2.7e-44 182.6 142 66.9
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.6e-44 182.2 142 69.7
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.6e-44 182.2 132 70.5
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.6e-44 182.2 132 70.5
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 6.1e-44 181.4 142 67.6
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 1.8e-43 179.9 140 67.9
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 2.3e-43 179.5 132 67.4
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.7e-43 177.9 144 68.1
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 8.8e-43 177.6 142 66.9
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.0e-42 176.4 142 65.5
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 2.0e-42 176.4 142 67.6
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 4.3e-42 175.3 142 64.8
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 1.7e-41 173.3 142 65.5
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.2e-41 172.9 142 66.9
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.2e-41 172.9 142 66.9
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 4.8e-41 171.8 127 72.4
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.1e-40 170.6 125 70.4
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.4e-40 169.5 122 73.8
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.1e-40 169.1 122 72.1
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 2.6e-39 166.0 115 73.9
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 4.5e-39 165.2 143 64.3
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.3e-38 163.7 132 65.9
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 2.2e-38 162.9 144 63.9
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-38 162.9 108 78.7
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 2.2e-38 162.9 146 63.7
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 2.9e-38 162.5 143 61.5
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 3.8e-38 162.2 143 63.6
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 5.0e-38 161.8 143 62.2
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.0e-38 161.8 159 59.1
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.1e-37 160.6 150 62.0
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 1.1e-37 160.6 132 61.4
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 1.4e-37 160.2 143 64.3
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.4e-37 160.2 146 62.3
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 1.9e-37 159.8 142 60.6
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.5e-37 159.5 144 62.5
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 3.2e-37 159.1 107 71.0
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 4.2e-37 158.7 143 62.2
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 7.2e-37 157.9 143 61.5
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.1e-36 156.4 144 61.8
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.7e-36 156.0 134 61.9
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 7.9e-36 154.5 144 60.4
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.0e-35 154.1 128 61.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 1.0e-35 154.1 144 62.5
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 1.4e-35 153.7 124 64.5
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 3.9e-35 152.1 134 64.2
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 3.9e-35 152.1 134 64.2
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 6.7e-35 151.4 143 58.0
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 8.8e-35 151.0 122 66.4
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 1.1e-34 150.6 107 68.2
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 5.3e-32 141.7 107 65.4
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 2.0e-31 139.8 125 55.2
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 4.5e-31 138.7 87 81.6
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 8.0e-28 127.9 142 49.3
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 3.9e-27 125.6 107 59.8
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.1e-26 124.0 124 52.4
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.6e-26 122.9 100 69.0
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 4.4e-26 122.1 111 55.9
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 1.7e-25 120.2 123 52.0
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 1.8e-24 116.7 113 54.0
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 6.5e-22 108.2 100 58.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.1e-21 107.5 100 57.0
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.5e-21 106.3 124 46.0
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 2.1e-20 103.2 70 74.3
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 2.0e-18 96.7 80 63.8
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.4e-18 95.9 70 65.7
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 7.0e-16 88.2 85 55.3
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.6e-15 87.0 74 59.5
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 2.0e-15 86.7 80 53.8
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 2.7e-15 86.3 70 57.1
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.2e-13 79.3 83 53.0
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 7.0e-08 61.6 62 54.8


User provided reference genes

Program Settings