Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 8.9e-53 209.9 100 100.0
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 4.4e-52 207.6 99 99.0
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 3.2e-50 201.4 99 94.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 3.5e-49 198.0 99 93.9
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 2.8e-46 188.3 101 90.1
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 6.2e-46 187.2 102 88.2
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 6.2e-46 187.2 101 89.1
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 6.2e-46 187.2 101 89.1
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.8e-45 185.7 101 88.1
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 1.5e-44 182.6 101 87.1
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 7.5e-44 180.3 101 85.1
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.3e-43 179.5 101 84.2
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 1.7e-43 179.1 101 83.2
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.2e-43 178.7 101 85.1
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.7e-43 177.9 101 84.2
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 4.9e-43 177.6 101 83.2
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 4.9e-43 177.6 101 83.2
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 6.4e-43 177.2 101 82.2
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 6.4e-43 177.2 101 84.2
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 1.1e-42 176.4 101 85.1
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.1e-42 176.4 101 82.2
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 1.4e-42 176.0 101 85.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 2.4e-42 175.3 101 83.2
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 3.2e-42 174.9 101 84.2
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.2e-42 174.9 101 80.2
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 4.1e-42 174.5 100 83.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 5.4e-42 174.1 101 81.2
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 5.4e-42 174.1 101 81.2
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 5.4e-42 174.1 101 82.2
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 5.4e-42 174.1 101 82.2
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 5.4e-42 174.1 101 81.2
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 9.2e-42 173.3 101 81.2
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 9.2e-42 173.3 101 82.2
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 9.2e-42 173.3 101 81.2
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 9.2e-42 173.3 101 83.2
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 9.2e-42 173.3 101 81.2
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.2e-41 172.9 101 82.2
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.2e-41 172.9 101 82.2
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.6e-41 172.6 101 81.2
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 2.1e-41 172.2 101 82.2
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 2.7e-41 171.8 101 82.2
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 2.7e-41 171.8 101 80.2
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 4.6e-41 171.0 101 82.2
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 6.0e-41 170.6 101 81.2
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 6.0e-41 170.6 101 81.2
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.3e-40 169.5 100 82.0
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.7e-40 169.1 102 79.4
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.7e-40 169.1 102 79.4
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.7e-40 169.1 101 81.2
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.3e-40 168.7 101 80.2
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.9e-40 167.9 101 80.2
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 5.1e-40 167.5 101 83.2
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 5.1e-40 167.5 100 81.0
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.1e-40 167.5 100 81.0
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.1e-40 167.5 100 81.0
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.1e-40 167.5 100 81.0
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 6.6e-40 167.2 100 82.0
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 8.6e-40 166.8 101 79.2
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 8.6e-40 166.8 101 79.2
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 8.6e-40 166.8 101 79.2
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 8.6e-40 166.8 101 79.2
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 8.6e-40 166.8 101 81.2
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 8.6e-40 166.8 102 77.5
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.9e-39 165.6 100 81.0
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 1.9e-39 165.6 101 80.2
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.5e-39 165.2 101 79.2
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 3.3e-39 164.9 101 78.2
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 7.3e-39 163.7 101 81.2
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 7.3e-39 163.7 101 78.2
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 9.5e-39 163.3 100 81.0
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 1.2e-38 162.9 102 77.5
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 1.2e-38 162.9 101 80.2
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.2e-38 162.9 101 80.2
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.8e-38 161.8 100 79.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 2.8e-38 161.8 101 78.2
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.8e-38 161.8 102 76.5
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 6.2e-38 160.6 101 74.3
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 8.1e-38 160.2 116 69.0
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.0e-37 157.9 101 75.2
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.3e-35 152.9 100 75.0
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 2.9e-35 151.8 100 71.0
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 1.1e-34 149.8 101 76.2
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 2.4e-34 148.7 100 75.0
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 5.4e-34 147.5 100 75.0
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 7.1e-34 147.1 99 72.7
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 7.1e-34 147.1 100 74.0
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 9.2e-34 146.7 100 74.0
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 9.2e-34 146.7 100 74.0
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 9.2e-34 146.7 99 72.7
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 9.2e-34 146.7 101 71.3
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.2e-33 146.4 114 63.2
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 7.8e-33 143.7 98 73.5
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.0e-32 143.3 101 70.3
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 1.5e-31 139.4 109 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.6e-30 136.0 108 60.2
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.6e-25 119.4 100 61.0
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 6.0e-25 117.5 99 57.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 7.8e-25 117.1 116 56.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 3.3e-23 111.7 104 53.8
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 4.3e-23 111.3 99 56.6
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 5.3e-21 104.4 75 69.3
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 6.4e-19 97.4 62 75.8
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 2.5e-07 58.9 26 100.0


User provided reference genes

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