Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 3.1e-187 658.3 325 100.0
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.2e-177 625.5 326 95.7
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 7.1e-168 594.0 329 89.4
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.6e-164 582.8 327 87.2
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.8e-164 581.3 329 86.9
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.8e-164 581.3 329 86.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.0e-158 563.5 329 85.4
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.9e-157 559.3 327 84.7
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.3e-156 556.6 325 85.8
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.7e-156 555.1 327 84.4
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 9.0e-155 550.4 327 83.8
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.9e-152 542.7 325 83.1
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 5.1e-142 508.1 326 78.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.8e-139 499.6 328 77.1
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.4e-139 499.2 326 77.0
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 3.1e-139 498.8 326 75.5
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 6.9e-139 497.7 326 75.2
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 8.5e-137 490.7 325 76.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.4e-136 490.0 325 75.7
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.4e-136 490.0 335 74.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.2e-136 488.8 325 75.4
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.2e-136 487.6 341 73.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 7.2e-136 487.6 341 74.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-134 483.8 357 71.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.8e-134 483.0 337 74.8
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 4.4e-133 478.4 321 72.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-132 476.1 334 72.8
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.4e-131 473.4 328 72.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.8e-131 473.0 334 72.2
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.4e-131 472.6 326 73.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.3e-131 471.5 338 71.6
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.0e-130 469.5 326 72.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.7e-129 466.5 345 70.4
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.8e-129 465.3 338 70.4
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 5.0e-129 464.9 385 64.4
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.5e-129 464.5 386 64.5
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 8.5e-129 464.2 327 69.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.5e-128 463.4 331 69.8
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.9e-128 463.0 326 72.4
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.2e-128 461.8 325 72.0
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 7.2e-128 461.1 331 71.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.2e-127 460.3 329 70.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 3.6e-127 458.8 326 73.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 4.7e-127 458.4 390 63.1
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 4.0e-126 455.3 337 70.3
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 8.8e-126 454.1 257 83.7
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 8.8e-126 454.1 326 72.1
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.0e-125 453.0 332 69.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.3e-125 452.2 332 69.0
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.3e-125 452.2 344 66.3
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.3e-124 450.3 331 69.8
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.2e-122 443.7 326 68.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.0e-122 443.0 384 62.0
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 2.7e-122 442.6 383 62.1
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 5.0e-121 438.3 375 63.5
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.0e-121 438.3 357 64.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 8.5e-121 437.6 331 67.7
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.2e-120 435.3 325 68.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 4.2e-120 435.3 330 67.3
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 9.4e-120 434.1 363 62.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.2e-119 433.7 355 63.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.2e-119 433.7 334 67.1
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.7e-119 432.6 333 66.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.7e-119 432.6 388 60.1
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.7e-119 431.8 301 73.4
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.0e-118 428.7 340 67.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 8.8e-118 427.6 382 61.5
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.0e-117 426.4 347 63.7
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.7e-116 423.3 335 66.0
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.8e-116 422.5 418 56.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.8e-116 422.5 418 56.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.4e-115 420.2 418 55.7
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 4.5e-114 415.2 210 91.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.5e-114 415.2 333 65.2
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.0e-113 414.1 337 62.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-113 414.1 208 92.3
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 8.5e-113 411.0 281 73.7
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.1e-112 410.6 389 58.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.9e-112 409.8 344 63.1
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 5.5e-112 408.3 334 62.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 2.7e-111 406.0 391 57.8
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 8.0e-111 404.4 333 63.7
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.5e-109 400.2 351 62.7
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.5e-106 389.0 289 67.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-104 383.6 263 69.2
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.5e-104 382.9 324 62.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 5.6e-104 381.7 325 60.0
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 5.6e-104 381.7 334 59.3
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.4e-102 377.1 325 59.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.8e-102 376.7 297 65.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.4e-101 372.1 483 46.6
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 9.8e-101 370.9 325 58.8
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.4e-99 366.3 367 55.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.4e-99 366.3 317 60.9
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.2e-99 365.9 377 54.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.5e-98 362.5 325 58.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.3e-97 360.5 326 57.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.9e-97 359.0 320 59.4
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.1e-96 357.5 361 54.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-95 354.0 341 56.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.6e-93 346.3 386 51.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 8.3e-92 341.3 325 53.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 5.0e-89 332.0 325 52.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 5.0e-89 332.0 325 52.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 3.3e-88 329.3 325 52.3
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.6e-87 325.9 337 50.7
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.0e-85 320.1 412 48.3
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-85 318.5 327 51.4
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 4.9e-84 315.5 245 69.0
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.9e-83 313.5 334 50.3
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 3.2e-83 312.8 326 50.0
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 4.1e-83 312.4 330 50.9
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-82 310.5 330 50.9
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.7e-82 309.7 325 49.8
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 5.6e-80 302.0 334 47.6
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.4e-77 292.7 174 80.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.6e-71 273.9 168 75.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.8e-71 273.1 262 52.3
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.1e-70 269.6 159 76.7
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 8.4e-68 261.5 263 55.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.1e-62 243.0 303 46.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.8e-61 238.8 153 74.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.2e-59 232.6 150 76.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.3e-57 226.9 372 38.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.3e-51 204.9 186 62.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.3e-48 196.1 119 80.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-46 191.4 130 71.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.7e-39 166.4 320 35.3
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.1e-38 163.3 100 78.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.3e-31 139.0 100 67.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.5e-29 134.4 120 65.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.4e-29 133.3 122 62.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.3e-28 131.3 80 75.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.9e-20 103.6 55 78.2
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.6e-18 96.7 100 58.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-17 95.1 55 87.3
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.4e-16 89.7 48 87.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 6.3e-15 85.9 53 69.8
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.1e-14 83.2 76 56.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 5.5e-11 72.8 448 20.1


User provided reference genes

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