Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 9.3e-74 280.4 173 100.0
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.4e-60 235.3 173 88.4
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.3e-59 233.4 174 83.9
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.1e-53 213.8 173 80.3
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.0e-51 204.9 173 78.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 8.4e-51 204.1 174 64.9
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.1e-50 203.8 174 79.3
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.1e-50 203.8 174 79.3
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.4e-50 203.4 165 75.8
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.2e-49 200.3 164 75.0
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.2e-49 200.3 174 76.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.6e-49 199.9 175 70.9
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.6e-49 198.4 175 71.4
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 6.1e-49 198.0 174 74.7
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.3e-48 196.8 177 57.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.0e-48 195.7 174 73.0
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 6.7e-48 194.5 173 60.1
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 8.7e-48 194.1 163 74.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 8.7e-48 194.1 174 75.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 9.7e-47 190.7 164 74.4
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.6e-46 189.9 163 74.8
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 4.8e-46 188.3 164 74.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.3e-46 188.0 159 71.1
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.3e-46 188.0 159 72.3
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 8.2e-46 187.6 172 68.6
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 8.2e-46 187.6 172 70.9
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.1e-45 185.7 159 70.4
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 4.1e-45 185.3 172 69.2
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 4.1e-45 185.3 174 73.6
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.1e-45 185.3 175 66.9
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 9.0e-45 184.1 158 72.2
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.5e-44 183.3 159 73.6
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.5e-44 183.3 165 73.9
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.0e-43 180.6 175 68.6
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 172 69.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.2e-43 179.5 159 72.3
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.9e-43 179.1 149 74.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.8e-43 178.7 159 63.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 5.0e-43 178.3 172 70.3
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 8.5e-43 177.6 174 56.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.5e-43 177.6 174 56.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.5e-43 177.6 174 56.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-42 176.8 174 56.9
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.4e-42 176.8 172 68.6
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.2e-42 174.5 175 70.3
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.6e-41 173.3 175 65.1
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.7e-41 172.6 175 67.4
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.7e-41 172.6 177 67.2
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.6e-41 172.2 159 73.6
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.6e-41 172.2 182 64.3
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 4.6e-41 171.8 172 67.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 4.6e-41 171.8 172 67.4
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 6.1e-41 171.4 173 65.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 7.9e-41 171.0 165 66.1
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 7.9e-41 171.0 165 66.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 7.9e-41 171.0 165 66.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 7.9e-41 171.0 160 75.6
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.9e-41 171.0 155 71.0
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 7.9e-41 171.0 172 67.4
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.0e-40 170.6 174 70.7
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.0e-40 170.6 174 68.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.1e-40 168.3 173 67.6
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.1e-40 168.3 174 54.6
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 8.8e-40 167.5 174 69.5
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 2.5e-39 166.0 164 57.3
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.3e-39 165.6 170 67.1
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 4.3e-39 165.2 174 68.4
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.7e-39 164.9 174 64.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 7.4e-39 164.5 159 65.4
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 7.4e-39 164.5 173 65.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.3e-38 163.7 138 78.3
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.3e-38 163.7 159 56.0
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.2e-38 162.9 229 42.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.8e-38 162.5 174 62.1
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.8e-38 162.5 165 69.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 165 69.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 4.8e-38 161.8 165 69.1
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 6.3e-38 161.4 182 67.6
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.1e-37 160.6 175 66.3
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.4e-37 160.2 170 54.1
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.1e-37 159.1 170 65.3
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 173 47.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.3e-37 158.3 170 63.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.9e-37 157.9 170 64.1
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 6.9e-37 157.9 143 68.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.2e-36 157.1 164 53.0
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.2e-36 157.1 164 68.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.2e-36 157.1 179 68.7
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.0e-36 156.4 152 65.8
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.0e-36 156.4 159 66.7
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 4.5e-36 155.2 140 70.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 5.9e-36 154.8 164 65.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 7.7e-36 154.5 166 51.8
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.0e-35 154.1 173 52.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.3e-35 153.7 159 61.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-35 152.9 170 50.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 158 69.6
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 158 69.6
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.0e-35 151.8 176 65.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 5.0e-35 151.8 170 49.4
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 6.5e-35 151.4 153 52.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 6.5e-35 151.4 152 63.8
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 8.5e-35 151.0 159 67.3
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 8.5e-35 151.0 148 59.5
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 8.5e-35 151.0 171 60.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.1e-34 150.6 162 64.8
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-34 149.4 171 48.5
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 3.2e-34 149.1 158 65.8
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 4.2e-34 148.7 168 51.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.2e-34 148.7 174 60.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 4.2e-34 148.7 175 63.4
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.5e-34 148.3 162 53.1
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 7.2e-34 147.9 159 66.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 9.4e-34 147.5 163 64.4
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 9.4e-34 147.5 163 58.9
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 1.6e-33 146.7 163 51.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.1e-33 146.4 170 67.1
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.6e-33 145.6 167 62.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 3.6e-33 145.6 176 65.9
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 177 63.8
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.8e-32 143.3 170 50.6
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 3.9e-32 142.1 176 63.6
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 1.5e-31 140.2 174 62.1
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.4e-31 137.9 177 62.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 7.4e-31 137.9 176 60.2
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 7.4e-31 137.9 163 64.4
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-30 137.1 167 57.5
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 153 67.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.2e-30 136.3 176 60.2
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 59.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 59.7
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 6.3e-30 134.8 126 69.0
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 8.2e-30 134.4 177 58.8
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.8e-29 133.3 168 60.1
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.4e-29 132.9 155 69.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.0e-27 127.5 82 72.0
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 8.0e-25 117.9 126 68.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.0e-24 115.9 132 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.7e-24 114.8 116 44.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.4e-21 107.1 135 50.4
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 3.1e-21 105.9 78 62.8
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 4.1e-21 105.5 129 50.4
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.7e-19 100.1 103 68.9
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 6.5e-19 98.2 121 47.9
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 4.7e-17 92.0 53 69.8
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 6.1e-17 91.7 111 48.6
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.0e-16 89.4 152 40.8
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.0e-16 89.0 87 79.3
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.6e-15 86.3 101 71.3
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.1e-13 80.9 62 54.8
arahy.Tifrunner.gnm1.ann1.6NYM2I Arachis hypogaea HOM05D000336 ORTHO05D023213 8.8e-08 61.2 45 73.3


User provided reference genes

Program Settings