Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 3.4e-273 944.5 516 100.0
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 3.1e-258 894.8 517 94.6
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 3.6e-238 828.2 487 89.3
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 6.1e-238 827.4 487 89.9
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 1.6e-206 723.0 495 78.6
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 1.6e-201 706.4 497 76.7
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 3.3e-199 698.7 502 76.3
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 3.6e-198 695.3 500 76.6
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 3.6e-198 695.3 500 76.6
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 3.7e-195 685.3 498 75.5
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 1.3e-192 676.8 496 75.4
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 1.1e-154 550.8 395 73.9
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 4.5e-140 502.3 532 62.0
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 5.8e-140 501.9 500 59.8
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.6e-137 493.8 499 58.3
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 6.0e-137 491.9 499 58.7
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 1.5e-135 487.3 494 58.7
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 9.7e-135 484.6 501 58.5
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.1e-133 481.1 501 58.5
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.6e-132 476.5 501 57.7
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.7e-131 473.8 500 57.8
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.7e-131 473.8 501 58.7
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.0e-131 472.2 501 57.7
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 3.2e-130 469.5 502 56.6
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 3.2e-130 469.5 500 57.4
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 5.1e-128 462.2 501 57.7
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 1.1e-127 461.1 500 57.4
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.5e-127 459.9 503 57.5
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 3.3e-127 459.5 502 57.2
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.4e-125 454.1 501 56.5
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 1.3e-123 447.6 531 57.6
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.7e-123 447.2 494 57.1
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.5e-123 445.3 560 51.4
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 1.9e-122 443.7 502 53.8
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.2e-122 442.6 560 51.2
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 9.4e-122 441.4 499 53.7
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 9.4e-122 441.4 528 54.0
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.9e-121 438.3 561 51.2
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 6.7e-120 435.3 504 55.0
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 1.1e-119 434.5 502 54.4
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 5.7e-119 432.2 505 54.5
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 3.7e-118 429.5 557 54.0
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 1.2e-116 424.5 500 53.0
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.5e-116 424.1 501 55.1
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 2.0e-116 423.7 559 49.9
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 5.5e-114 415.6 471 53.9
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 1.6e-113 414.1 576 47.6
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 5.2e-112 409.1 432 57.2
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 1.2e-108 397.9 503 48.7
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 7.7e-108 395.2 503 48.5
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 2.2e-107 393.7 510 50.2
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 2.9e-107 393.3 533 53.5
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 2.9e-107 393.3 501 50.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.9e-106 390.6 496 50.4
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.9e-106 390.6 513 50.1
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.4e-104 384.4 512 47.5
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 2.6e-103 380.2 489 50.1
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.7e-102 377.5 503 49.9
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 1.4e-101 374.4 507 46.9
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 2.4e-101 373.6 497 49.3
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 1.2e-100 371.3 493 48.5
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 8.5e-99 365.2 435 54.7
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.8e-93 347.4 508 49.2
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 4.1e-93 346.3 517 46.4
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 1.2e-92 344.7 357 57.7
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 1.2e-92 344.7 446 50.2
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.0e-88 331.6 428 51.6
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 4.0e-88 329.7 454 49.1
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 3.9e-83 313.2 489 43.6
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 6.6e-83 312.4 466 48.7
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 8.6e-83 312.0 499 44.7
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 9.5e-82 308.5 537 42.6
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 9.5e-82 308.5 498 43.0
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 6.1e-81 305.8 492 43.7
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.4e-79 300.1 506 43.5
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 4.1e-77 293.1 372 51.6
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 1.5e-74 284.6 411 49.1
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 1.2e-63 248.4 427 45.9
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 8.3e-62 242.3 258 55.8
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 1.6e-57 228.0 326 47.5
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 1.8e-32 144.8 327 39.4
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 1.4e-29 135.2 312 39.7
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 1.6e-28 131.7 281 39.9
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 4.8e-25 120.2 79 82.3
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 1.1e-24 119.0 159 49.1
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 1.2e-23 115.5 552 30.3
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 5.8e-23 113.2 76 81.6
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 2.2e-22 111.3 225 39.6
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 7.1e-21 106.3 71 81.7
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.6e-20 105.1 317 32.8
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.1e-20 104.8 168 42.9
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.1e-18 99.0 64 70.3
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 2.5e-18 97.8 73 67.1
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 4.3e-18 97.1 184 41.8
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 9.7e-18 95.9 53 90.6
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 6.3e-17 93.2 67 64.2
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 4.6e-12 77.0 44 84.1
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 2.3e-11 74.7 176 39.2
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 6.7e-11 73.2 61 68.9
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 6.7e-11 73.2 61 68.9
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 4.3e-10 70.5 40 85.0
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 7.7e-07 59.7 64 53.1


User provided reference genes

Program Settings