Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 0.0e+00 1262.3 626 100.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 0.0e+00 1143.6 637 90.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.9e-311 1070.8 631 86.7
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.6e-309 1065.4 631 86.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.6e-264 916.0 660 73.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.7e-261 904.4 576 78.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.1e-257 893.3 658 72.5
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 3.2e-257 891.7 659 73.0
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.6e-256 889.4 641 72.9
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 3.5e-256 888.3 644 73.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 3.3e-254 881.7 663 70.9
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 2.2e-250 869.0 597 74.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 5.4e-249 864.4 597 74.0
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 2.1e-248 862.4 551 79.1
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 4.6e-248 861.3 614 73.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 8.4e-242 840.5 572 73.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.1e-241 840.1 572 74.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.5e-240 835.1 572 73.1
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.3e-239 833.2 638 68.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.5e-238 828.9 644 67.4
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.3e-238 828.2 574 73.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 5.6e-238 827.8 580 72.6
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.6e-238 827.0 644 67.2
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.2e-237 824.3 599 71.3
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.4e-236 822.4 620 69.4
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.4e-236 822.4 578 72.1
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 4.0e-236 821.6 574 72.8
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.2e-235 820.1 600 71.2
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-235 820.1 600 71.2
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.0e-235 819.3 592 71.1
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.0e-235 819.3 643 67.0
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-235 818.9 620 69.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.4e-235 818.5 600 71.0
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 5.8e-235 817.8 600 71.0
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.6e-235 817.4 620 69.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-234 816.2 599 70.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.9e-234 815.5 600 70.8
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-233 812.8 600 70.7
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.9e-233 812.8 617 68.7
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.2e-233 812.0 637 66.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 5.5e-233 811.2 611 68.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.2e-232 810.1 592 69.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.1e-232 809.3 619 68.3
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.6e-232 808.1 573 71.6
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 4.6e-232 808.1 611 67.6
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 6.0e-232 807.7 630 68.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 3.0e-231 805.4 574 70.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.7e-231 804.3 578 69.6
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.8e-229 798.9 572 71.7
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 5.3e-228 794.7 573 70.2
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 6.9e-228 794.3 573 69.8
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 9.0e-228 793.9 639 65.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.5e-227 793.1 573 70.7
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.5e-227 793.1 574 69.2
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.0e-227 792.7 574 69.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.9e-226 788.9 573 69.8
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.4e-225 786.6 614 67.1
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 4.2e-225 785.0 573 68.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.7e-224 782.3 575 69.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.5e-224 781.9 579 70.3
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 7.9e-224 780.8 552 71.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.9e-222 776.2 558 71.9
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.5e-222 775.8 581 68.0
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.5e-222 775.8 581 68.0
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.3e-222 775.0 575 68.7
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 5.7e-222 774.6 577 68.3
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 7.4e-222 774.2 575 68.7
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.6e-221 773.1 577 68.3
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.6e-219 765.8 576 67.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 7.7e-219 764.2 578 68.3
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.0e-218 763.8 577 69.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.2e-218 762.7 574 68.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.1e-217 760.4 577 67.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-217 760.4 577 67.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.1e-217 760.4 577 67.9
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.9e-217 759.6 644 63.8
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.9e-217 759.6 576 68.4
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.7e-216 755.7 601 68.1
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.4e-215 753.4 574 66.9
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 3.9e-215 751.9 647 63.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 8.8e-215 750.7 574 66.9
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.1e-214 750.4 587 65.9
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 7.7e-211 737.6 571 65.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.7e-210 736.5 576 65.8
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.1e-209 733.8 532 69.4
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.9e-209 733.0 657 60.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 3.6e-208 728.8 571 65.5
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 4.7e-208 728.4 571 65.7
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.1e-208 728.0 648 60.2
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.9e-207 725.3 571 65.3
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.0e-206 723.0 623 61.8
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 4.8e-205 718.4 629 60.7
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 4.8e-205 718.4 576 64.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.1e-204 715.3 623 61.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.3e-204 714.9 585 62.7
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.7e-202 709.9 586 62.6
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-202 708.8 653 61.3
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 3.8e-202 708.8 653 61.3
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 3.8e-202 708.8 653 61.3
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-201 707.2 579 63.2
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.8e-199 699.9 572 63.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.5e-198 694.5 581 62.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.7e-197 693.3 516 69.0
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 4.8e-197 691.8 545 65.5
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 3.1e-196 689.1 565 63.5
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 7.0e-196 688.0 634 58.7
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.0e-194 684.1 664 59.8
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.3e-194 683.7 521 68.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.7e-194 683.3 601 59.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.7e-194 683.3 611 60.2
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.3e-189 667.2 563 64.3
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 4.8e-189 665.2 635 59.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.5e-185 652.9 578 60.7
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 4.2e-185 652.1 553 63.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.9e-178 629.4 594 58.9
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.3e-177 625.9 620 55.6
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.6e-174 616.3 589 58.4
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 8.3e-173 611.3 574 58.0
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.1e-172 609.0 578 56.6
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 2.3e-167 593.2 659 53.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.3e-162 576.6 598 54.0
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.9e-156 557.0 465 62.6
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.5e-150 537.3 579 51.3
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 6.0e-147 525.4 553 54.6
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.3e-146 524.2 482 58.5
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.8e-143 513.8 414 65.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.1e-140 504.6 568 49.6
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 4.9e-133 479.2 374 65.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.4e-132 476.9 353 69.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.1e-115 420.6 416 52.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 4.3e-113 412.9 397 53.9
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.9e-101 373.6 303 66.0
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.3e-89 333.6 365 53.4
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.9e-68 264.6 591 32.7
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 5.9e-62 243.0 403 40.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 3.8e-61 240.4 188 65.4
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 4.3e-52 210.3 204 53.4
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.7e-45 188.3 172 57.0
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 7.3e-36 156.4 152 55.3
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 6.6e-29 133.3 314 30.9
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-27 128.3 76 78.9
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 4.7e-27 127.1 97 68.0
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-19 101.7 93 60.2
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 5.3e-18 97.1 105 50.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 9.6e-12 76.3 61 59.0
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 9.9e-09 66.2 58 62.1
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 1.6e-06 58.9 42 71.4


User provided reference genes

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