Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 7.3e-242 840.1 416 100.0
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.4e-189 666.4 402 81.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.4e-183 645.2 355 89.6
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.7e-178 627.1 371 83.0
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 7.7e-175 617.5 416 73.3
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 4.4e-162 575.1 411 70.6
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 2.2e-161 572.8 353 80.7
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.8e-147 526.6 367 69.2
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.3e-147 526.2 369 68.6
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 6.2e-140 501.5 383 65.0
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.2e-138 497.3 416 58.7
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 7.5e-138 494.6 337 71.2
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.3e-137 493.8 400 60.2
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 6.4e-137 491.5 360 67.5
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 8.3e-137 491.1 414 59.2
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 1.6e-135 486.9 347 68.3
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.6e-135 486.9 382 61.8
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.0e-135 485.0 415 58.8
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.1e-133 480.7 420 58.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-133 480.7 325 70.8
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.8e-132 476.1 383 59.8
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 2.8e-132 476.1 384 61.2
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 4.7e-132 475.3 404 58.4
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 6.2e-132 474.9 404 58.4
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-131 473.8 384 61.2
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.1e-131 472.6 404 57.9
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 5.2e-131 471.9 387 57.6
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 7.5e-130 468.0 395 58.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.7e-129 466.8 363 63.1
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.2e-128 462.6 388 59.3
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 3.2e-128 462.6 400 57.8
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.2e-127 460.7 403 57.6
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 7.8e-127 458.0 403 57.8
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 1.3e-126 457.2 345 64.3
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.0e-126 456.1 345 63.5
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 2.8e-124 449.5 402 55.7
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 4.7e-124 448.7 383 58.0
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 4.7e-124 448.7 390 57.4
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 8.1e-124 448.0 328 63.7
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 2.6e-122 443.0 408 53.7
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.7e-121 440.3 328 62.5
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 9.2e-120 434.5 384 56.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.6e-119 433.7 246 85.4
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.6e-119 432.2 397 56.2
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 7.8e-119 431.4 412 53.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.7e-118 430.3 384 55.5
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 5.1e-118 428.7 345 59.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 8.6e-118 427.9 411 54.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 1.9e-117 426.8 378 56.3
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.2e-116 424.1 344 59.0
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 4.7e-116 422.2 393 54.5
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 8.9e-115 417.9 371 55.3
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 2.6e-114 416.4 416 51.4
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 4.4e-114 415.6 372 53.8
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 5.8e-114 415.2 297 67.3
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 7.6e-114 414.8 402 53.7
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 1.7e-113 413.7 381 53.0
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.9e-113 412.9 416 52.2
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 6.4e-113 411.8 314 63.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-112 411.0 327 62.4
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 4.2e-112 409.1 404 53.0
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.8e-111 404.8 285 67.0
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.3e-110 404.1 369 54.7
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 5.1e-110 402.1 369 54.7
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 6.6e-110 401.7 369 55.0
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.5e-109 400.6 364 53.8
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.9e-109 400.2 369 54.7
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.9e-109 400.2 403 49.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 2.5e-109 399.8 318 60.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 4.3e-109 399.1 374 52.7
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 5.6e-109 398.7 313 60.1
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 9.6e-109 397.9 416 50.5
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 2.8e-108 396.4 425 51.1
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 4.8e-108 395.6 400 52.0
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 5.3e-107 392.1 454 48.2
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 5.3e-107 392.1 363 55.9
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 6.9e-107 391.7 331 57.4
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 7.6e-106 388.3 402 50.2
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.3e-105 387.5 411 49.9
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.2e-104 382.9 350 53.1
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 9.3e-104 381.3 400 48.2
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.3e-102 377.5 363 52.9
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.0e-102 376.3 328 56.7
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 6.2e-100 368.6 405 47.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.7e-97 360.5 246 69.9
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 4.2e-96 355.9 368 49.5
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 5.1e-94 349.0 343 52.2
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.9e-93 347.1 344 50.6
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.5e-93 346.7 386 48.4
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.6e-92 344.0 230 71.3
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 4.8e-92 342.4 355 48.2
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 7.6e-90 335.1 339 51.0
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.7e-89 334.0 219 71.2
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.7e-89 334.0 330 51.8
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 9.3e-88 328.2 400 44.2
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.4e-83 313.5 303 53.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.3e-83 312.4 375 47.2
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 7.4e-77 292.0 298 49.7
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.4e-75 287.0 248 57.7
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.2e-74 284.6 291 50.5
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 6.1e-71 272.3 371 43.7
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.1e-67 261.5 205 62.4
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 3.1e-51 206.8 182 54.9
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 1.0e-46 191.8 175 52.0
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.8e-43 181.0 199 48.7
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.9e-40 171.0 167 51.5
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 5.7e-37 159.5 231 38.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 5.9e-34 149.4 167 44.9
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.3e-33 147.5 198 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 1.7e-20 104.8 141 40.4
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 6.4e-20 102.8 246 30.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.8e-15 87.4 174 32.8
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 8.9e-14 82.4 169 31.4
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 2.0e-13 81.3 196 31.6
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 7.5e-13 79.3 185 32.4
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.3e-12 78.6 202 29.2
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.7e-12 78.2 181 32.6
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.9e-12 77.4 190 31.6
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.9e-11 74.7 184 31.5
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.4e-11 74.3 197 28.4
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 2.4e-11 74.3 190 28.9
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.2e-11 73.9 197 31.5
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 5.4e-11 73.2 201 29.4
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 5.4e-11 73.2 201 29.4
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 7.1e-11 72.8 201 27.9
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 9.2e-11 72.4 186 32.3
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.6e-10 71.6 254 28.3
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.5e-10 70.5 171 32.2
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 7.8e-10 69.3 204 29.4
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.0e-09 68.9 182 31.9
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.0e-09 68.9 195 26.7
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 2.3e-09 67.8 182 31.3
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.3e-09 67.8 157 31.8
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 6.6e-09 66.2 47 55.3
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 8.6e-09 65.9 192 27.6
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 5.6e-08 63.2 195 26.2
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 7.3e-08 62.8 156 29.5
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 9.5e-08 62.4 219 26.9
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 3.6e-07 60.5 158 31.0
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 4.7e-07 60.1 156 28.8
RcHm_v2.0_Chr2g0166381 Rosa chinensis HOM05D000001 ORTHO05D000003 6.2e-07 59.7 266 23.3
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 3.1e-06 57.4 190 27.9
Lsat_1_v5_gn_7_110600 Lactuca sativa HOM05D000001 ORTHO05D000003 5.2e-06 56.6 230 25.7


User provided reference genes

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