Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 3.6e-39 164.5 84 100.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.7e-34 148.3 83 92.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.0e-25 118.2 79 74.7
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 1.1e-24 116.3 79 72.2
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.3e-24 114.8 86 74.4
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.3e-24 113.6 79 70.9
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 7.3e-24 113.6 79 69.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-23 112.8 77 74.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.1e-23 112.1 78 67.9
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.8e-23 111.7 77 67.5
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-22 109.4 73 69.9
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 5.2e-22 107.5 79 65.8
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 3.4e-21 104.8 79 64.6
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-20 102.8 81 60.5
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 2.9e-20 101.7 83 65.1
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.9e-20 100.9 83 66.3
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.4e-20 100.5 80 65.0
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.2e-19 98.2 79 64.6
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 7.1e-19 97.1 83 60.2
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.6e-18 95.9 83 57.8
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-17 93.2 83 54.2
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.9e-17 91.3 83 53.0
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 5.1e-17 90.9 83 53.0
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.1e-17 90.9 83 53.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 5.1e-17 90.9 75 54.7
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 8.6e-17 90.1 83 57.8
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 8.6e-17 90.1 83 57.8
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.6e-17 90.1 83 51.8
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.3e-16 88.2 75 54.7
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 3.3e-16 88.2 77 58.4
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 3.3e-16 88.2 77 58.4
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 7.3e-16 87.0 82 52.4
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.8e-15 85.1 85 57.6
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 3.6e-15 84.7 73 54.8
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.2e-15 84.0 80 52.5
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.1e-15 83.6 80 51.2
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.1e-15 83.6 80 51.2
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 8.1e-15 83.6 77 53.2
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-14 83.2 80 51.2
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-14 82.4 83 50.6
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-14 82.0 84 48.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-14 82.0 83 50.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-13 79.7 67 55.2
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.2e-13 79.7 67 55.2
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.0e-13 79.0 75 56.0
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.0e-13 79.0 75 56.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.0e-13 79.0 79 53.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.6e-13 78.6 79 53.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.6e-13 78.6 82 53.7
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.4e-13 78.2 67 53.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.4e-13 77.8 67 53.7
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.8e-13 77.4 81 50.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 7.6e-13 77.0 81 46.9
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.6e-13 77.0 75 54.7
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-12 76.3 66 59.1
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.2e-12 75.5 73 50.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 2.9e-12 75.1 54 61.1
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 3.8e-12 74.7 71 52.1
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 4.9e-12 74.3 74 52.7
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.4e-12 73.9 85 49.4
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.4e-12 73.9 69 50.7
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.4e-12 73.9 69 50.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 6.4e-12 73.9 75 53.3
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.4e-12 73.9 80 48.8
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 8.4e-12 73.6 72 51.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.4e-12 73.6 78 47.4
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 8.4e-12 73.6 66 56.1
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.4e-11 72.8 75 49.3
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.9e-11 72.4 70 51.4
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.9e-11 72.4 70 44.3
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 1.9e-11 72.4 72 50.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.4e-11 72.0 75 48.0
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.2e-11 71.6 79 53.2
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 4.1e-11 71.2 73 54.8
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 7.1e-11 70.5 75 49.3
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.2e-10 69.7 74 50.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-10 69.7 80 47.5
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.6e-10 69.3 57 56.1
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.1e-10 68.9 82 41.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.1e-10 68.9 81 45.7
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 2.7e-10 68.6 45 62.2
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 2.7e-10 68.6 52 55.8
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.5e-10 68.2 75 45.3
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 3.5e-10 68.2 77 49.4
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 4.6e-10 67.8 81 43.2
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 4.6e-10 67.8 83 47.0
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.3e-09 66.2 45 64.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.3e-09 66.2 82 50.0
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 85 51.8
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.9e-09 64.7 39 64.1
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 6.6e-09 63.9 80 40.0
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 1.1e-08 63.2 81 45.7
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.9e-08 62.4 73 46.6
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.5e-08 62.0 62 50.0
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 2.5e-08 62.0 75 46.7
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 3.3e-08 61.6 52 55.8
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.3e-08 61.6 44 68.2
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 3.3e-08 61.6 57 49.1
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 4.3e-08 61.2 101 37.6
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.2e-07 59.7 84 45.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.1e-07 58.9 39 64.1
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.8e-07 58.5 74 44.6
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.7e-07 57.8 75 46.7
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 4.7e-07 57.8 82 45.1
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 1.1e-06 56.6 74 43.2
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.4e-06 56.2 45 53.3
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-06 55.8 87 39.1
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-06 55.8 43 58.1
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.8e-06 55.8 76 43.4
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 2.4e-06 55.5 62 45.2
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 4.0e-06 54.7 81 39.5
Medtr4g029470 Medicago truncatula HOM05D006892 ORTHO05D259580 4.0e-06 54.7 34 70.6
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 4.0e-06 54.7 75 42.7
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 5.2e-06 54.3 47 53.2


User provided reference genes

Program Settings