Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G103400 Glycine max HOM05D002981 ORTHO05D003725 8.8e-31 136.3 70 100.0
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 5.9e-27 123.6 70 94.3
Glyma.14G140200 Glycine max HOM05D002981 ORTHO05D003725 7.2e-25 116.7 70 88.6
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 2.1e-24 115.2 70 88.6
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 1.0e-23 112.8 68 86.8
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 1.0e-23 112.8 68 86.8
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 2.3e-23 111.7 68 85.3
Lalb_Chr02g0146691 Lupinus albus HOM05D002981 ORTHO05D003725 2.0e-22 108.6 68 82.4
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 7.4e-22 106.7 68 80.9
TPR.G19768 Trifolium pratense HOM05D002981 ORTHO05D003725 2.8e-21 104.8 68 79.4
Haze_04080 Corylus avellana HOM05D002981 ORTHO05D003725 3.7e-21 104.4 68 75.0
Psat6g163280 Pisum sativum HOM05D002981 ORTHO05D003725 3.7e-21 104.4 68 79.4
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 4.8e-21 104.0 68 80.9
Lj5g0008352 Lotus japonicus HOM05D002981 ORTHO05D003725 1.1e-20 102.8 68 79.4
Manes.05G002000 Manihot esculenta HOM05D002981 ORTHO05D003725 1.4e-20 102.4 68 76.5
Gohir.A12G126400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.4e-20 101.7 69 75.4
Gorai.007G124200 Gossypium raimondii HOM05D002981 ORTHO05D003725 3.1e-20 101.3 66 78.8
TAR365G0113 Trochodendron aralioides HOM05D002981 ORTHO05D003725 3.1e-20 101.3 68 73.5
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 4.1e-20 100.9 69 73.9
TWI56G0814 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 9.1e-20 99.8 69 73.9
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 1.2e-19 99.4 68 72.1
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 1.2e-19 99.4 68 72.1
CiPaw.08G156600 Carya illinoinensis HOM05D002981 ORTHO05D003725 1.2e-19 99.4 68 73.5
CANSAT54G0071 Cannabis sativa HOM05D002981 ORTHO05D003725 2.6e-19 98.2 67 74.6
Gohir.D12G129900 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.6e-19 98.2 69 71.0
Gorai.008G141100 Gossypium raimondii HOM05D002981 ORTHO05D003725 2.6e-19 98.2 69 71.0
MSTRG.27951 Avicennia marina HOM05D002981 ORTHO05D003725 3.4e-19 97.8 69 71.0
Dinv24424 Davidia involucrata HOM05D002981 ORTHO05D003725 3.4e-19 97.8 68 73.5
Gohir.A08G118600 Gossypium hirsutum HOM05D002981 ORTHO05D003725 4.5e-19 97.4 67 74.6
Gohir.D08G139400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 4.5e-19 97.4 67 74.6
Gorai.004G143300 Gossypium raimondii HOM05D002981 ORTHO05D003725 4.5e-19 97.4 67 74.6
Potri.002G198300 Populus trichocarpa HOM05D002981 ORTHO05D003725 4.5e-19 97.4 68 73.5
vmacro19723 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 4.5e-19 97.4 68 75.0
Haze_05013 Corylus avellana HOM05D002981 ORTHO05D003725 5.9e-19 97.1 68 73.5
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 5.9e-19 97.1 68 75.0
Duzib133G0744 Durio zibethinus HOM05D002981 ORTHO05D003725 7.7e-19 96.7 68 72.1
Glyma.03G232000 Glycine max HOM05D002981 ORTHO05D003725 7.7e-19 96.7 68 70.6
Lj5A337G17 Lonicera japonica HOM05D002981 ORTHO05D003725 7.7e-19 96.7 68 75.0
TAR362G0641 Trochodendron aralioides HOM05D002981 ORTHO05D003725 7.7e-19 96.7 68 70.6
unitig_21.g20026 Utricularia gibba HOM05D002981 ORTHO05D003725 7.7e-19 96.7 69 69.6
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 1.0e-18 96.3 68 73.5
Rhsim11G0094000 Rhododendron simsii HOM05D002981 ORTHO05D003725 1.0e-18 96.3 68 72.1
Sabra02G0159300 Salix brachista HOM05D002981 ORTHO05D003725 1.0e-18 96.3 68 72.1
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 1.3e-18 95.9 68 73.5
vmacro01554 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 1.3e-18 95.9 68 72.1
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 1.7e-18 95.5 68 72.1
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.9e-18 94.7 68 70.6
Dinv30871 Davidia involucrata HOM05D002981 ORTHO05D003725 2.9e-18 94.7 68 72.1
Lj1g0022270 Lotus japonicus HOM05D002981 ORTHO05D003725 2.9e-18 94.7 67 68.7
Prupe.6G315000 Prunus persica HOM05D002981 ORTHO05D003725 2.9e-18 94.7 69 68.1
Oeu013220.1 Olea europaea HOM05D002981 ORTHO05D003725 3.8e-18 94.4 68 72.1
Glyma.19G229000 Glycine max HOM05D002981 ORTHO05D003725 5.0e-18 94.0 68 67.6
Potri.014G122800 Populus trichocarpa HOM05D002981 ORTHO05D003725 5.0e-18 94.0 68 75.0
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 6.5e-18 93.6 70 67.1
MD12G1207400 Malus domestica HOM05D002981 ORTHO05D003725 8.5e-18 93.2 69 69.6
PSO210G1046 Papaver somniferum HOM05D002981 ORTHO05D003725 8.5e-18 93.2 70 70.0
Lsat_1_v5_gn_5_102801 Lactuca sativa HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 72.1
Manes.09G175600 Manihot esculenta HOM05D002981 ORTHO05D003725 1.1e-17 92.8 67 68.7
Nitab4.5_0000368g0270 Nicotiana tabacum HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 69.1
PSO761G0326 Papaver somniferum HOM05D002981 ORTHO05D003725 1.1e-17 92.8 70 70.0
Peaxi162Scf00071g00438 Petunia axillaris HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 69.1
QL12p028974 Quercus lobata HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 67.6
VMungo1383G3526 Vigna mungo HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 69.1
GSVIVG01031219001 Vitis vinifera HOM05D002981 ORTHO05D003725 1.1e-17 92.8 68 69.1
Cpa.g.sc18.9 Carica papaya HOM05D002981 ORTHO05D003725 1.4e-17 92.4 67 68.7
Gohir.D07G131800 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.4e-17 92.4 67 70.1
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.4e-17 92.4 67 70.1
MD04G1195300 Malus domestica HOM05D002981 ORTHO05D003725 1.4e-17 92.4 69 68.1
Hund07135 Selenicereus undatus HOM05D002981 ORTHO05D003725 1.4e-17 92.4 68 67.6
Solyc01g100320.3 Solanum lycopersicum HOM05D002981 ORTHO05D003725 1.4e-17 92.4 68 69.1
Sopen01g043830 Solanum pennellii HOM05D002981 ORTHO05D003725 1.4e-17 92.4 68 69.1
THA.LOC104802194 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 1.4e-17 92.4 69 65.2
TWI75G0141 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 1.4e-17 92.4 67 71.6
CiPaw.07G115400 Carya illinoinensis HOM05D002981 ORTHO05D003725 1.9e-17 92.0 68 67.6
ClCG09G005250 Citrullus lanatus HOM05D002981 ORTHO05D003725 2.5e-17 91.7 67 67.2
Ciclev10020618m.g Citrus clementina HOM05D002981 ORTHO05D003725 2.5e-17 91.7 67 70.1
Aqoxy2G02802 Aquilegia oxysepala HOM05D002981 ORTHO05D003725 3.2e-17 91.3 70 68.6
BcaC01g05028 Brassica carinata HOM05D002981 ORTHO05D003725 3.2e-17 91.3 69 65.2
C03p30980 Brassica napus HOM05D002981 ORTHO05D003725 3.2e-17 91.3 69 65.2
Nitab4.5_0009033g0020 Nicotiana tabacum HOM05D002981 ORTHO05D003725 3.2e-17 91.3 68 67.6
SalBow3G0105 Salvia bowleyana HOM05D002981 ORTHO05D003725 3.2e-17 91.3 68 69.1
Ah.06g188900 Amaranthus hybridus HOM05D002981 ORTHO05D003725 4.2e-17 90.9 70 67.1
Sc16g0008930 Simmondsia chinensis HOM05D002981 ORTHO05D003725 4.2e-17 90.9 70 67.1
SGA_v2.0_scaffold81G26125 Striga asiatica HOM05D002981 ORTHO05D003725 4.2e-17 90.9 69 66.7
AL4G47030 Arabidopsis lyrata HOM05D002981 ORTHO05D003725 7.2e-17 90.1 69 63.8
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 7.2e-17 90.1 68 66.2
CSS0025736 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 9.4e-17 89.7 68 69.1
TWI18G0728 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 9.4e-17 89.7 67 70.1
MSTRG.5139 Avicennia marina HOM05D002981 ORTHO05D003725 1.2e-16 89.4 69 63.8
CAN.G1273.1 Capsicum annuum HOM05D002981 ORTHO05D003725 1.2e-16 89.4 68 67.6
Oeu053701.1 Olea europaea HOM05D002981 ORTHO05D003725 1.2e-16 89.4 69 63.8
Sabra14G0091200 Salix brachista HOM05D002981 ORTHO05D003725 1.2e-16 89.4 87 58.6
Sed0023511 Sechium edule HOM05D002981 ORTHO05D003725 1.2e-16 89.4 67 64.2
ECA234G2827 Erigeron canadensis HOM05D002981 ORTHO05D003725 1.6e-16 89.0 68 69.1
Aa31LG1G28770 Aethionema arabicum HOM05D002981 ORTHO05D003725 2.1e-16 88.6 69 63.8
AUR62000684 Chenopodium quinoa HOM05D002981 ORTHO05D003725 2.1e-16 88.6 70 68.6
FAN02G4218 Fragaria x ananassa HOM05D002981 ORTHO05D003725 2.1e-16 88.6 69 63.8
Peaxi162Scf00673g00127 Petunia axillaris HOM05D002981 ORTHO05D003725 2.1e-16 88.6 68 66.2
Hund21746 Selenicereus undatus HOM05D002981 ORTHO05D003725 2.1e-16 88.6 68 64.7
BraA03t11815Z Brassica rapa HOM05D002981 ORTHO05D003725 2.7e-16 88.2 69 63.8
Carub.0004s3019 Capsella rubella HOM05D002981 ORTHO05D003725 2.7e-16 88.2 69 62.3
AUR62005272 Chenopodium quinoa HOM05D002981 ORTHO05D003725 2.7e-16 88.2 70 67.1
HanXRQChr10g0299231 Helianthus annuus HOM05D002981 ORTHO05D003725 2.7e-16 88.2 68 67.6
ATR0706G068 Amborella trichopoda HOM05D002981 ORTHO05D003725 3.6e-16 87.8 69 62.3
AT2G47470 Arabidopsis thaliana HOM05D002981 ORTHO05D003725 3.6e-16 87.8 69 62.3
BcaB01g03165 Brassica carinata HOM05D002981 ORTHO05D003725 3.6e-16 87.8 69 62.3
Cc02_g34820 Coffea canephora HOM05D002981 ORTHO05D003725 3.6e-16 87.8 68 66.2
SGA_v2.0_scaffold80G25880 Striga asiatica HOM05D002981 ORTHO05D003725 3.6e-16 87.8 69 65.2
A03p25980 Brassica napus HOM05D002981 ORTHO05D003725 4.7e-16 87.4 69 62.3
Eucgr.K03531 Eucalyptus grandis HOM05D002981 ORTHO05D003725 4.7e-16 87.4 68 64.7
FvH4_6g07230 Fragaria vesca HOM05D002981 ORTHO05D003725 4.7e-16 87.4 69 62.3
FAN09G2340 Fragaria x ananassa HOM05D002981 ORTHO05D003725 4.7e-16 87.4 69 62.3
FAN14G0083 Fragaria x ananassa HOM05D002981 ORTHO05D003725 4.7e-16 87.4 69 62.3
RcHm_v2.0_Chr3g0456861 Rosa chinensis HOM05D002981 ORTHO05D003725 4.7e-16 87.4 69 62.3
PGSC0003DMG400002779 Solanum tuberosum HOM05D002981 ORTHO05D003725 4.7e-16 87.4 68 66.2
MELO3C015939.2 Cucumis melo HOM05D002981 ORTHO05D003725 6.1e-16 87.0 67 62.7
FAN05G2722 Fragaria x ananassa HOM05D002981 ORTHO05D003725 6.1e-16 87.0 68 63.2
unitig_26.g10138 Utricularia gibba HOM05D002981 ORTHO05D003725 8.0e-16 86.7 69 62.3
Thhalv10001515m.g Eutrema salsugineum HOM05D002981 ORTHO05D003725 1.0e-15 86.3 69 60.9
CDE02G3360 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 1.4e-15 85.9 67 62.7
CDE09G1190 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 1.4e-15 85.9 67 62.7
CsaV3_7G029820 Cucumis sativus L. HOM05D002981 ORTHO05D003725 1.4e-15 85.9 67 61.2
Phvul.001G225600 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 1.4e-15 85.9 69 66.7
Sed0000157 Sechium edule HOM05D002981 ORTHO05D003725 1.4e-15 85.9 67 62.7
THA.LOC104817468 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 1.4e-15 85.9 69 60.9
CARHR142860 Cardamine hirsuta HOM05D002981 ORTHO05D003725 1.8e-15 85.5 69 60.9
Migut.N02114 Erythranthe guttata HOM05D002981 ORTHO05D003725 1.8e-15 85.5 69 62.3
Lsat_1_v5_gn_7_73501 Lactuca sativa HOM05D002981 ORTHO05D003725 1.8e-15 85.5 67 62.7
Sp4g29410 Schrenkiella parvula HOM05D002981 ORTHO05D003725 1.8e-15 85.5 69 58.0
CSS0028783 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 3.0e-15 84.7 68 63.2
Atru.chr5.1047 Acer truncatum HOM05D002981 ORTHO05D003725 3.9e-15 84.3 68 63.2
Psat3g013080 Pisum sativum HOM05D002981 ORTHO05D003725 3.9e-15 84.3 67 65.7
SalBow7G4351 Salvia bowleyana HOM05D002981 ORTHO05D003725 5.2e-15 84.0 69 62.3
HPP92_015970 Vanilla planifolia HOM05D002981 ORTHO05D003725 5.2e-15 84.0 70 60.0
HPP92_015969 Vanilla planifolia HOM05D002981 ORTHO05D003725 8.8e-15 83.2 70 60.0
Os01g0339900 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 2.0e-14 82.0 70 55.7
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 2.6e-14 81.6 69 58.0
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 2.6e-14 81.6 69 58.0
BolC4t21686H Brassica oleracea HOM05D002981 ORTHO05D003725 2.6e-14 81.6 69 58.0
SHI12762 Sapria himalayana HOM05D002981 ORTHO05D003725 2.6e-14 81.6 67 55.2
BcaB02g08769 Brassica carinata HOM05D002981 ORTHO05D003725 4.4e-14 80.9 69 58.0
Rhsim05G0133600 Rhododendron simsii HOM05D002981 ORTHO05D003725 4.4e-14 80.9 86 58.1
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 5.7e-14 80.5 69 56.5
DCAR_005415 Daucus carota HOM05D002981 ORTHO05D003725 7.4e-14 80.1 68 58.8
Os05g0156300 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 7.4e-14 80.1 70 55.7
ECA236G5052 Erigeron canadensis HOM05D002981 ORTHO05D003725 9.7e-14 79.7 68 60.3
EL10Ac4g09830 Beta vulgaris HOM05D002981 ORTHO05D003725 2.2e-13 78.6 70 62.9
SEGI_15151 Sequoiadendron giganteum HOM05D002981 ORTHO05D003725 2.2e-13 78.6 68 55.9
DCAR_025272 Daucus carota HOM05D002981 ORTHO05D003725 2.8e-13 78.2 68 55.9
Medtr7g112040 Medicago truncatula HOM05D002981 ORTHO05D003725 8.2e-13 76.6 65 60.0
TPR.G1663 Trifolium pratense HOM05D002981 ORTHO05D003725 1.8e-12 75.5 65 61.5
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 5.3e-12 73.9 59 67.8
C04p39530 Brassica napus HOM05D002981 ORTHO05D003725 1.2e-11 72.8 69 52.2
BolC4t25518H Brassica oleracea HOM05D002981 ORTHO05D003725 1.2e-11 72.8 69 52.2
VMungo0540G1080 Vigna mungo HOM05D002981 ORTHO05D003725 1.2e-11 72.8 66 60.6
arahy.Tifrunner.gnm1.ann1.PTRY8R Arachis hypogaea HOM05D002981 ORTHO05D003725 3.5e-11 71.2 68 55.9
QL03p018289 Quercus lobata HOM05D002981 ORTHO05D003725 7.7e-11 70.1 51 66.7
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 2.9e-10 68.2 47 72.3
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.5e-09 65.9 47 66.0
Pp3c4_19910 Physcomitrium patens HOM05D002981 ORTHO05D003725 1.9e-09 65.5 67 49.3
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 5.5e-09 63.9 66 48.5
CBR_g41286 Chara braunii HOM05D002981 ORTHO05D003725 3.6e-08 61.2 70 48.6
Ca_09297_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 2.3e-07 58.5 54 55.6
ECA234G4491 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.3e-07 58.5 78 48.7
CBR_g35008 Chara braunii HOM05D002981 ORTHO05D003725 4.0e-07 57.8 70 45.7
ECA234G0860 Erigeron canadensis HOM05D002981 ORTHO05D003725 4.0e-07 57.8 49 61.2
DCAR_029360 Daucus carota HOM05D002981 ORTHO05D003725 8.8e-07 56.6 47 57.4
VMungo0251G1886 Vigna mungo HOM05D002981 ORTHO05D003725 8.8e-07 56.6 47 59.6
SMO201G0065 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 1.5e-06 55.8 67 40.3
arahy.Tifrunner.gnm1.ann1.LY6DXQ Arachis hypogaea HOM05D002981 ORTHO05D003725 7.5e-06 53.5 39 64.1
Zm00001eb282710 Zea mays HOM05D002981 ORTHO05D003725 9.7e-06 53.1 47 53.2
Zm00001eb418550 Zea mays HOM05D002981 ORTHO05D003725 9.7e-06 53.1 47 53.2


User provided reference genes

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