Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 3.7e-48 194.5 95 100.0
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 2.1e-43 178.7 96 93.8
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 1.5e-28 129.4 96 67.7
TPR.G2700 Trifolium pratense HOM05D008579 ORTHO05D010245 7.2e-28 127.1 95 69.5
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 1.8e-26 122.5 96 63.5
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 3.0e-26 121.7 96 63.5
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 1.2e-25 119.8 96 64.6
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 1.2e-25 119.8 96 64.6
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 2.6e-25 118.6 95 62.1
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 4.4e-25 117.9 88 71.6
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 3.8e-21 104.8 96 58.3
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 3.2e-20 101.7 96 57.3
Medtr1g093920 Medicago truncatula HOM05D008579 ORTHO05D010245 4.2e-20 101.3 99 57.6
TPR.G9816 Trifolium pratense HOM05D008579 ORTHO05D010245 1.0e-18 96.7 99 55.6
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 1.4e-18 96.3 99 59.6
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 2.4e-15 85.5 97 49.5
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 3.5e-14 81.6 91 53.8
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 7.7e-14 80.5 94 52.1
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 3.2e-12 75.1 72 51.4
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 5.5e-12 74.3 90 47.8
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 5.5e-12 74.3 90 47.8
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 2.1e-11 72.4 79 51.9
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 1.4e-10 69.7 93 46.2
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.8e-10 69.3 100 46.0
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 1.2e-09 66.6 93 41.9
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 2.0e-09 65.9 82 50.0
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 4.4e-09 64.7 90 41.1
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 2.2e-08 62.4 78 44.9
Solyc05g010000.1 Solanum lycopersicum HOM05D022312 ORTHO05D014564 2.2e-08 62.4 99 37.4
Lsat_1_v5_gn_4_17220 Lactuca sativa HOM05D008579 ORTHO05D010245 2.8e-08 62.0 96 43.8
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 3.7e-08 61.6 42 64.3
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 6.3e-08 60.8 94 40.4
Sp5g23880 Schrenkiella parvula HOM05D010485 ORTHO05D010245 6.3e-08 60.8 82 45.1
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 1.1e-07 60.1 71 46.5
Sopen05g005810 Solanum pennellii HOM05D022312 ORTHO05D014564 1.1e-07 60.1 99 36.4
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 1.4e-07 59.7 97 38.1
BcaC03g17283 Brassica carinata HOM05D010662 ORTHO05D012734 2.4e-07 58.9 91 44.0
C02p52300 Brassica napus HOM05D010662 ORTHO05D012734 2.4e-07 58.9 91 44.0
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 2.4e-07 58.9 86 43.0
AL2G27710 Arabidopsis lyrata HOM05D010485 ORTHO05D010245 4.1e-07 58.2 84 40.5
CARHR061590 Cardamine hirsuta HOM05D010485 ORTHO05D010245 4.1e-07 58.2 84 40.5
BraA02t08416Z Brassica rapa HOM05D010662 ORTHO05D012734 5.4e-07 57.8 86 41.9
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 5.4e-07 57.8 97 40.2
BolC2t11312H Brassica oleracea HOM05D010662 ORTHO05D012734 7.0e-07 57.4 87 44.8
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 7.0e-07 57.4 83 42.2
BcaB05g24410 Brassica carinata HOM05D010485 ORTHO05D010245 9.2e-07 57.0 82 42.7
Thhalv10005200m.g Eutrema salsugineum HOM05D010662 ORTHO05D012734 9.2e-07 57.0 90 38.9
A02p33980 Brassica napus HOM05D010662 ORTHO05D012734 1.2e-06 56.6 90 40.0
AT1G68765 Arabidopsis thaliana HOM05D010485 ORTHO05D010245 1.6e-06 56.2 84 42.9
BcaB07g30260 Brassica carinata HOM05D010662 ORTHO05D012734 2.7e-06 55.5 90 37.8
CSS0039536 Camellia sinensis var. sinensis HOM05D008579 ORTHO05D010245 2.7e-06 55.5 44 63.6
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 2.7e-06 55.5 77 42.9
A02p15330 Brassica napus HOM05D010485 ORTHO05D010245 3.5e-06 55.1 82 41.5
BraA02t06594Z Brassica rapa HOM05D010485 ORTHO05D010245 3.5e-06 55.1 82 41.5
AT3G25655 Arabidopsis thaliana HOM05D010662 ORTHO05D012734 4.5e-06 54.7 84 45.2
BcaC03g14985 Brassica carinata HOM05D010485 ORTHO05D010245 5.9e-06 54.3 82 41.5
C02p25180 Brassica napus HOM05D010485 ORTHO05D010245 5.9e-06 54.3 82 41.5
BolC2t08597H Brassica oleracea HOM05D010485 ORTHO05D010245 5.9e-06 54.3 82 41.5
MELO3C005351.2 Cucumis melo HOM05D065573 ORTHO05D010245 5.9e-06 54.3 74 39.2
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 7.8e-06 53.9 89 39.3


User provided reference genes

Program Settings