Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G084400 Glycine max HOM05D000108 ORTHO05D002946 5.8e-52 207.2 101 100.0
Glyma.09G136400 Glycine max HOM05D000108 ORTHO05D002946 2.7e-33 145.2 115 67.8
Glyma.16G181900 Glycine max HOM05D000108 ORTHO05D002946 1.3e-32 142.9 114 67.5
Phvul.004G113500 Phaseolus vulgaris HOM05D000108 ORTHO05D002946 6.9e-29 130.6 114 60.5
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.9e-26 122.5 89 68.5
Lj2g0024658 Lotus japonicus HOM05D000108 ORTHO05D002946 3.6e-25 118.2 78 74.4
Medtr6g053680 Medicago truncatula HOM05D000108 ORTHO05D002946 3.3e-23 111.7 88 62.5
Ca_17889_v3 Cicer arietinum L. HOM05D000108 ORTHO05D002946 6.3e-22 107.5 89 62.9
Lalb_Chr01g0009411 Lupinus albus HOM05D000108 ORTHO05D002946 4.1e-21 104.8 89 60.7
Psat0s2150g0040 Pisum sativum HOM05D000108 ORTHO05D002946 4.1e-21 104.8 89 64.0
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 5.5e-18 94.4 93 55.9
arahy.Tifrunner.gnm1.ann1.T2EC32 Arachis hypogaea HOM05D000373 ORTHO05D002946 5.5e-18 94.4 93 55.9
TPR.G40034 Trifolium pratense HOM05D000108 ORTHO05D002946 5.5e-18 94.4 66 69.7
CANSAT21G1824 Cannabis sativa HOM05D000108 ORTHO05D002946 2.2e-14 82.4 94 47.9
Haze_00011 Corylus avellana HOM05D000108 ORTHO05D002946 6.3e-14 80.9 94 46.8
FAN03G2108 Fragaria x ananassa HOM05D000108 ORTHO05D002946 8.2e-14 80.5 93 49.5
FAN10G0690 Fragaria x ananassa HOM05D000108 ORTHO05D002946 8.2e-14 80.5 84 52.4
FvH4_7g29790 Fragaria vesca HOM05D000108 ORTHO05D002946 1.4e-13 79.7 94 46.8
FAN01G1502 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.4e-13 79.7 97 48.5
FAN06G2421 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.4e-13 79.7 94 46.8
FAN06G3170 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.4e-13 79.7 94 46.8
FAN10G2152 Fragaria x ananassa HOM05D001542 ORTHO05D001416 1.4e-13 79.7 93 49.5
FAN10G2547 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.8e-13 79.3 93 48.4
Duzib068G1445 Durio zibethinus HOM05D000108 ORTHO05D002946 2.4e-13 79.0 95 45.3
TPR.G8149 Trifolium pratense HOM05D000108 ORTHO05D002946 2.4e-13 79.0 55 70.9
RcHm_v2.0_Chr1g0377791 Rosa chinensis HOM05D000108 ORTHO05D002946 3.1e-13 78.6 93 49.5
MELO3C005479.2 Cucumis melo HOM05D000108 ORTHO05D002946 4.1e-13 78.2 94 46.8
Duzib205G0664 Durio zibethinus HOM05D000108 ORTHO05D002946 5.3e-13 77.8 96 44.8
Prupe.2G297200 Prunus persica HOM05D000108 ORTHO05D002946 7.0e-13 77.4 87 49.4
Thecc.03G179700 Theobroma cacao HOM05D000108 ORTHO05D002946 9.1e-13 77.0 81 49.4
CsaV3_5G004730 Cucumis sativus L. HOM05D000108 ORTHO05D002946 1.2e-12 76.6 94 45.7
QL07p048921 Quercus lobata HOM05D000108 ORTHO05D002946 1.2e-12 76.6 86 51.2
FAN03G0463 Fragaria x ananassa HOM05D000108 ORTHO05D002946 1.6e-12 76.3 93 46.2
TWI14G1102 Tripterygium wilfordii HOM05D000108 ORTHO05D002946 2.6e-12 75.5 88 42.0
GSVIVG01028911001 Vitis vinifera HOM05D000141 ORTHO05D002946 2.6e-12 75.5 82 47.6
Actinidia34130 Actinidia chinensis HOM05D000108 ORTHO05D002946 5.9e-12 74.3 82 43.9
Dinv28417 Davidia involucrata HOM05D000108 ORTHO05D002946 7.7e-12 73.9 81 49.4
TAR623G0328 Trochodendron aralioides HOM05D000108 ORTHO05D002946 1.0e-11 73.6 102 39.2
TAR636G3480 Trochodendron aralioides HOM05D000108 ORTHO05D002946 1.7e-11 72.8 82 45.1
Ciclev10004612m.g Citrus clementina HOM05D000108 ORTHO05D002946 2.2e-11 72.4 85 47.1
Gohir.A12G256300 Gossypium hirsutum HOM05D000108 ORTHO05D002946 2.2e-11 72.4 83 45.8
Gorai.008G275900 Gossypium raimondii HOM05D000108 ORTHO05D002946 3.8e-11 71.6 96 40.6
Cpa.g.sc107.73 Carica papaya HOM05D000108 ORTHO05D002946 5.0e-11 71.2 76 47.4
ClCG01G004510 Citrullus lanatus HOM05D000108 ORTHO05D002946 5.0e-11 71.2 85 45.9
Gohir.D12G257600 Gossypium hirsutum HOM05D000108 ORTHO05D002946 5.0e-11 71.2 96 40.6
PGR142G1655 Punica granatum HOM05D000108 ORTHO05D002946 6.5e-11 70.9 91 41.8
Lj8C22T8 Lonicera japonica HOM05D000108 ORTHO05D002946 8.5e-11 70.5 98 41.8
Solyc03g025470.4 Solanum lycopersicum HOM05D000108 ORTHO05D002946 8.5e-11 70.5 85 43.5
Sopen03g004310 Solanum pennellii HOM05D000108 ORTHO05D002946 8.5e-11 70.5 85 43.5
Actinidia25887 Actinidia chinensis HOM05D000108 ORTHO05D002946 1.1e-10 70.1 87 39.1
Sed0028139 Sechium edule HOM05D000108 ORTHO05D002946 1.1e-10 70.1 85 45.9
CAN.G1175.12 Capsicum annuum HOM05D000108 ORTHO05D002946 1.5e-10 69.7 85 41.2
Nitab4.5_0004439g0060 Nicotiana tabacum HOM05D000108 ORTHO05D002946 2.5e-10 68.9 84 42.9
vmacro06658 Vaccinium macrocarpon HOM05D000108 ORTHO05D002946 2.5e-10 68.9 81 45.7
Rhsim03G0187800 Rhododendron simsii HOM05D000141 ORTHO05D002946 3.2e-10 68.6 81 44.4
A06p34720 Brassica napus HOM05D019200 ORTHO05D002946 4.2e-10 68.2 93 43.0
BraA06t26400Z Brassica rapa HOM05D000108 ORTHO05D002946 4.2e-10 68.2 75 46.7
TWI39G0908 Tripterygium wilfordii HOM05D000108 ORTHO05D002946 4.2e-10 68.2 91 38.5
CiPaw.05G264300 Carya illinoinensis HOM05D000108 ORTHO05D002946 5.5e-10 67.8 92 43.5
CSS0042500 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.4e-10 67.0 77 41.6
PGSC0003DMG400015789 Solanum tuberosum HOM05D000108 ORTHO05D002946 1.2e-09 66.6 85 40.0
Nitab4.5_0000084g0080 Nicotiana tabacum HOM05D000108 ORTHO05D002946 1.6e-09 66.2 84 41.7
Atru.chr1.424 Acer truncatum HOM05D000108 ORTHO05D002946 3.6e-09 65.1 62 50.0
ECA238G4036 Erigeron canadensis HOM05D000108 ORTHO05D002946 3.6e-09 65.1 79 46.8
Potri.015G146000 Populus trichocarpa HOM05D000108 ORTHO05D002946 4.7e-09 64.7 94 35.1
Carub.0006s2163 Capsella rubella HOM05D000108 ORTHO05D002946 6.1e-09 64.3 89 41.6
Hma1.2p1_0227F.1_g095860 Hydrangea macrophylla HOM05D000108 ORTHO05D002946 8.0e-09 63.9 82 40.2
Oeu056273.1 Olea europaea HOM05D000108 ORTHO05D002946 8.0e-09 63.9 90 44.4
Lju891C3T6 Lonicera japonica HOM05D000108 ORTHO05D002946 1.0e-08 63.5 89 36.0
AT5G23910 Arabidopsis thaliana HOM05D000108 ORTHO05D002946 1.4e-08 63.2 79 44.3
Thhalv10005649m.g Eutrema salsugineum HOM05D000108 ORTHO05D002946 1.8e-08 62.8 91 39.6
BcaNung05473 Brassica carinata HOM05D000108 ORTHO05D002946 3.0e-08 62.0 75 44.0
THA.LOC104818166 Tarenaya hassleriana HOM05D000108 ORTHO05D002946 5.2e-08 61.2 85 43.5
CARHR189650 Cardamine hirsuta HOM05D000108 ORTHO05D002946 6.7e-08 60.8 71 45.1
Nn6g33425 Nelumbo nucifera HOM05D000108 ORTHO05D002946 6.7e-08 60.8 94 37.2
C07p43760 Brassica napus HOM05D000108 ORTHO05D002946 8.8e-08 60.5 75 44.0
Lsat_1_v5_gn_2_132740 Lactuca sativa HOM05D000108 ORTHO05D002946 1.1e-07 60.1 65 47.7
BcaNung01836 Brassica carinata HOM05D000108 ORTHO05D002946 1.5e-07 59.7 75 42.7
BolC7t44905H Brassica oleracea HOM05D000108 ORTHO05D002946 1.5e-07 59.7 75 42.7
Peaxi162Scf00444g00429 Petunia axillaris HOM05D000108 ORTHO05D002946 2.0e-07 59.3 85 38.8
Sc06g0007170 Simmondsia chinensis HOM05D000108 ORTHO05D002946 4.4e-07 58.2 88 42.0
SGA_v2.0_scaffold60G21070 Striga asiatica HOM05D001542 ORTHO05D001416 4.4e-07 58.2 92 39.1
MD01G1204800 Malus domestica HOM05D000108 ORTHO05D002946 7.5e-07 57.4 76 43.4
Ah.12g062400 Amaranthus hybridus HOM05D000108 ORTHO05D002946 1.3e-06 56.6 94 39.4
AL6G35230 Arabidopsis lyrata HOM05D000108 ORTHO05D002946 1.7e-06 56.2 84 36.9
Aa31LG11G3220 Aethionema arabicum HOM05D000108 ORTHO05D002946 2.2e-06 55.8 72 40.3
DCAR_020259 Daucus carota HOM05D000108 ORTHO05D002946 2.8e-06 55.5 63 42.9
MSTRG.27105 Avicennia marina HOM05D000108 ORTHO05D002946 3.7e-06 55.1 97 35.1
Mapoly0065s0078 Marchantia polymorpha HOM05D000108 ORTHO05D002946 6.3e-06 54.3 86 37.2
Sp2g23370 Schrenkiella parvula HOM05D000108 ORTHO05D002946 6.3e-06 54.3 75 40.0
ATR0559G004 Amborella trichopoda HOM05D000108 ORTHO05D002946 8.2e-06 53.9 67 43.3
SalBow3G2400 Salvia bowleyana HOM05D000108 ORTHO05D002946 8.2e-06 53.9 82 37.8


User provided reference genes

Program Settings