Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.1e-287 992.6 501 100.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.5e-268 927.2 506 93.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 8.2e-256 886.7 511 88.6
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.1e-239 831.2 512 84.4
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 5.5e-236 820.8 546 79.5
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.4e-236 820.1 544 79.8
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 9.4e-236 820.1 513 82.8
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 9.4e-236 820.1 513 82.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 8.8e-234 813.5 519 80.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.5e-220 767.7 530 78.1
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 9.5e-220 766.9 520 75.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-219 766.5 520 75.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.4e-217 758.4 525 74.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.5e-212 743.0 455 81.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.0e-210 736.9 522 71.5
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.0e-210 736.9 521 74.5
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.3e-210 735.7 521 74.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.2e-210 734.6 519 73.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.0e-209 732.6 529 73.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.9e-208 728.8 460 79.1
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.9e-208 728.0 521 73.9
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.9e-208 728.0 453 81.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.9e-207 726.1 487 77.0
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 7.0e-207 724.2 453 81.0
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.6e-206 723.0 522 73.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.6e-206 723.0 504 73.4
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.0e-206 721.1 470 77.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.8e-206 720.7 521 73.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 5.0e-205 718.0 529 72.2
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 6.6e-205 717.6 590 64.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 8.6e-205 717.2 521 71.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-204 716.5 519 70.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-204 716.5 453 81.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.3e-204 715.3 537 70.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.3e-204 714.1 516 70.9
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.3e-204 714.1 528 70.8
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.5e-204 713.8 516 70.9
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.0e-203 710.7 530 69.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-202 710.3 533 69.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.3e-202 709.1 517 70.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 5.2e-202 708.0 453 79.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.5e-201 706.4 402 88.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.5e-201 706.4 461 77.2
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 9.8e-201 703.7 434 81.3
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-199 700.3 453 77.7
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 3.2e-199 698.7 452 79.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.1e-199 698.4 453 77.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.1e-199 698.4 453 77.5
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 7.8e-198 694.1 468 74.8
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.0e-197 692.2 453 76.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.9e-197 691.8 452 77.0
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.5e-196 689.1 434 80.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.5e-196 689.1 453 76.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.3e-194 682.6 453 76.4
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 6.8e-194 681.0 451 75.8
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 4.9e-192 674.9 433 77.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.6e-190 669.8 453 73.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.5e-190 668.7 444 74.1
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.6e-190 668.3 524 67.9
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-189 666.4 455 75.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 5.1e-189 664.8 453 73.7
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.1e-188 663.7 527 67.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-187 659.8 505 66.9
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.6e-187 658.7 453 72.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.7e-187 658.3 407 81.1
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.8e-186 656.4 522 69.0
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 4.0e-186 655.2 453 73.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.4e-185 652.1 453 72.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 9.2e-183 644.0 512 65.2
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.5e-182 642.1 453 70.9
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.6e-182 641.7 452 73.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-181 640.2 453 70.6
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-181 640.2 453 70.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 3.0e-181 639.0 525 63.8
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 5.1e-181 638.3 453 72.0
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.9e-180 636.3 516 64.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.3e-180 635.2 453 70.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 7.3e-180 634.4 456 68.4
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 9.6e-180 634.0 471 66.9
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.2e-179 633.6 448 70.5
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 6.2e-179 631.3 453 69.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.2e-179 631.3 516 64.3
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 8.1e-179 630.9 469 68.2
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-178 629.8 452 69.0
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 6.9e-178 627.9 517 64.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.2e-177 627.1 523 65.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 4.4e-177 625.2 451 70.1
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 4.2e-175 618.6 733 49.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.7e-174 615.9 392 76.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 6.6e-173 611.3 410 73.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 4.5e-169 598.6 392 75.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.7e-168 596.7 427 71.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.3e-164 582.4 473 65.5
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 8.1e-163 577.8 448 67.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.5e-161 573.5 452 65.7
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.6e-161 571.2 452 65.7
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.8e-160 568.9 452 65.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.2e-159 565.8 457 64.3
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.2e-158 563.9 469 64.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.5e-158 562.4 517 60.3
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 8.7e-157 557.8 558 55.9
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.6e-155 553.5 351 78.3
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.0e-149 534.3 403 70.7
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 5.7e-148 528.5 340 79.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.0e-145 520.0 550 53.6
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.9e-144 516.2 457 61.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 2.3e-141 506.5 455 57.8
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.5e-135 486.5 450 56.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.4e-132 475.7 534 53.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.1e-127 461.1 435 54.7
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.3e-120 437.6 467 50.7
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.6e-118 430.6 342 64.9
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-117 427.6 451 54.5
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 5.3e-114 415.6 448 51.1
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.8e-112 409.5 481 49.9
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.5e-103 379.0 275 73.1
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.0e-101 374.8 215 86.5
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.9e-91 340.1 442 42.3
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 3.5e-89 333.2 437 43.9
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.1e-85 321.6 299 57.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.2e-85 319.3 396 49.5
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-82 311.2 365 51.2
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 3.3e-79 300.1 504 37.3
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 8.7e-64 248.8 212 67.0
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.4e-58 230.7 187 65.8
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.1e-55 221.9 159 67.3
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.8e-54 217.2 265 47.2
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 4.6e-49 199.9 258 45.7
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-49 199.9 249 46.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-47 194.9 159 62.9
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 3.5e-41 173.7 446 33.9
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.8e-40 171.4 116 69.8
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 4.3e-39 166.8 242 45.0
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 9.6e-39 165.6 122 71.3
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.6e-38 164.9 235 46.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.2e-38 162.5 358 32.1
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.2e-38 162.5 253 41.9
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.0e-35 155.6 159 56.6
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 2.9e-35 154.1 97 76.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.6e-33 148.3 151 57.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-33 147.9 100 70.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-32 144.1 166 51.2
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.1e-32 143.3 152 58.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.5e-31 141.0 152 56.6
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 4.8e-30 136.7 116 58.6
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-29 135.6 96 69.8
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.0e-28 131.3 104 61.5
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 5.5e-26 123.2 125 60.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.3e-23 113.6 78 75.6
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 5.7e-23 113.2 79 72.2
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.4e-23 112.8 61 90.2
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.2e-22 111.3 231 35.1
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 3.7e-22 110.5 221 38.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.8e-21 108.2 221 38.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 1.5e-20 105.1 94 57.4
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 6.5e-19 99.8 113 54.9
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.5e-15 88.6 61 72.1
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 8.2e-14 82.8 124 36.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-13 82.4 84 51.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.9e-12 76.6 117 45.3
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.6e-09 68.6 252 27.8
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-07 62.0 38 71.1
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-07 62.0 38 71.1
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 1.5e-07 62.0 38 71.1
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 1.5e-07 62.0 38 71.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 1.7e-06 58.5 38 73.7
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 1.7e-06 58.5 38 73.7
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 1.7e-06 58.5 38 73.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 3.7e-06 57.4 39 76.9


User provided reference genes

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