Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 2.1e-236 822.0 418 100.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 2.0e-183 646.0 352 93.5
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 6.3e-169 597.8 352 88.1
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.8e-166 588.6 352 85.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 3.3e-165 585.5 353 84.4
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 4.7e-164 581.6 353 84.1
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.9e-161 572.4 350 83.1
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 8.3e-161 570.9 350 81.7
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.1e-160 570.5 352 81.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.7e-159 565.8 350 82.3
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-157 560.5 353 81.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 9.5e-157 557.4 353 81.0
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.1e-156 556.2 353 80.5
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.9e-155 550.8 353 79.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 9.2e-152 540.8 347 77.8
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 7.8e-151 537.7 302 91.1
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.3e-150 537.0 347 76.7
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.7e-150 536.6 347 77.5
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.3e-150 536.2 347 78.1
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.3e-150 536.2 346 78.0
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 3.9e-150 535.4 302 90.7
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.5e-149 533.5 350 78.9
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.5e-149 533.5 347 77.2
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 4.3e-149 531.9 347 75.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 2.1e-148 529.6 347 76.4
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 6.2e-148 528.1 346 74.9
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.2e-148 528.1 345 75.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 8.1e-148 527.7 345 75.7
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.1e-147 527.3 345 76.2
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.8e-147 526.6 344 76.2
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 4.0e-147 525.4 347 75.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.8e-147 524.6 345 75.7
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.9e-147 524.2 347 74.4
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.4e-146 522.3 342 76.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 4.4e-146 521.9 343 76.1
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 7.5e-146 521.2 347 74.4
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.3e-145 520.4 347 74.4
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.9e-145 519.2 347 74.4
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 3.7e-145 518.8 345 74.2
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 3.7e-145 518.8 345 74.5
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.4e-144 516.9 347 73.2
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.4e-144 516.2 346 74.0
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.5e-143 512.3 347 72.9
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 7.8e-143 511.1 347 72.3
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 7.8e-143 511.1 348 70.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.3e-142 510.4 342 74.6
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 3.0e-142 509.2 347 72.3
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.9e-142 508.8 347 73.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.1e-141 507.3 348 71.8
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 5.6e-141 505.0 348 70.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.6e-141 505.0 347 70.6
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 5.6e-141 505.0 345 72.8
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.3e-141 504.6 333 74.2
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.0e-139 498.8 345 71.6
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 6.8e-139 498.0 345 71.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 2.0e-138 496.5 322 77.0
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.2e-137 493.0 347 68.6
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 4.9e-137 491.9 345 69.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.9e-137 491.9 345 70.1
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 4.9e-137 491.9 346 69.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 6.4e-137 491.5 347 69.7
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 6.4e-137 491.5 347 70.0
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.1e-136 490.7 347 69.7
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.4e-136 490.3 347 68.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.9e-136 490.0 347 70.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.9e-136 490.0 346 69.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 2.4e-136 489.6 345 69.6
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.1e-136 488.8 347 68.9
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 4.1e-136 488.8 347 68.3
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 4.1e-136 488.8 345 69.3
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 4.1e-136 488.8 347 70.0
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 7.1e-136 488.0 345 70.7
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.2e-135 487.3 348 71.0
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.6e-135 486.9 345 67.8
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.1e-135 486.5 345 68.7
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-135 486.1 347 68.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.0e-134 484.2 345 69.3
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.7e-134 483.4 342 69.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.3e-134 483.0 345 69.6
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.3e-134 483.0 347 70.3
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 5.1e-134 481.9 344 69.2
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 8.6e-134 481.1 347 68.6
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.5e-133 480.3 342 69.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-133 479.9 329 71.7
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.5e-133 479.6 347 67.1
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.5e-133 479.6 345 67.2
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.5e-133 479.6 345 67.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.5e-133 479.6 345 67.2
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 9.6e-133 477.6 345 67.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.1e-132 476.5 347 66.6
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.1e-131 474.2 346 69.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.4e-131 473.0 342 67.5
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.9e-131 471.5 316 73.4
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-130 470.7 343 68.5
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.2e-129 466.5 347 65.7
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.9e-129 466.1 344 67.2
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.4e-128 461.8 345 65.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.6e-127 460.3 346 65.6
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.6e-127 460.3 345 66.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.1e-127 459.9 347 65.1
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 7.8e-127 458.0 346 67.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 7.3e-125 451.4 292 75.7
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.1e-124 449.9 346 66.5
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 2.8e-124 449.5 349 64.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.8e-124 449.5 345 62.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.8e-123 446.8 347 64.0
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.6e-122 441.4 345 65.5
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 2.9e-121 439.5 347 61.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 8.4e-121 438.0 341 61.6
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.4e-120 435.3 344 61.9
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.6e-119 433.7 322 66.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.1e-119 433.3 352 61.6
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 4.8e-116 422.2 343 63.8
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.1e-115 419.5 344 60.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 8.4e-113 411.4 409 54.8
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 9.3e-112 407.9 347 60.8
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.4e-99 367.5 354 53.4
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.5e-98 364.0 256 69.5
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 8.7e-94 348.2 343 51.9
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 5.3e-91 339.0 329 51.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.6e-90 336.7 266 61.7
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 2.3e-86 323.6 339 52.5
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 7.2e-80 302.0 347 46.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 1.6e-74 284.3 347 44.1
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 3.2e-64 250.0 350 43.1
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 6.1e-63 245.7 348 41.1
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.7e-58 228.8 271 46.1
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.8e-51 207.6 328 38.4
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.5e-48 198.0 147 68.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.7e-44 184.5 155 63.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.0e-38 163.3 108 78.7
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 8.3e-36 155.6 315 36.5
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.6e-33 145.6 242 40.1
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.1e-31 141.0 160 49.4
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.1e-31 141.0 117 57.3
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.5e-29 134.8 87 67.8
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 7.1e-27 125.9 82 76.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 7.6e-21 105.9 68 85.3
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.4e-20 102.8 69 65.2
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.4e-06 58.5 47 61.7


User provided reference genes

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