Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.0e-151 540.0 272 100.0
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.2e-120 436.8 377 67.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.8e-108 396.4 374 62.6
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 2.3e-103 379.4 375 61.1
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 4.1e-92 342.0 373 55.2
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.0e-90 337.4 376 55.6
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.7e-90 336.7 378 56.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.9e-90 335.9 368 56.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 9.4e-89 330.9 368 55.4
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.8e-85 319.3 376 54.3
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 5.3e-84 315.1 369 53.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 4.2e-81 305.4 377 50.7
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 5.4e-76 288.5 371 47.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 2.5e-73 279.6 283 55.1
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.1e-72 276.6 283 54.1
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.7e-72 276.2 291 52.9
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.7e-72 276.2 370 47.0
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 4.7e-72 275.4 291 53.6
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 6.1e-72 275.0 361 47.1
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 8.8e-71 271.2 283 53.4
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.2e-70 270.8 283 53.7
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.6e-70 269.6 291 50.9
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 3.4e-70 269.2 287 53.0
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.7e-69 266.9 333 47.1
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 2.8e-69 266.2 291 51.2
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 6.3e-69 265.0 283 52.7
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 6.3e-69 265.0 360 48.1
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.8e-68 263.5 315 49.8
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 3.1e-68 262.7 291 50.9
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 9.2e-68 261.2 291 52.2
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 9.2e-68 261.2 346 47.1
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.2e-67 260.8 284 52.8
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.2e-67 260.8 329 47.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.2e-67 260.8 291 51.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.2e-67 260.8 283 51.2
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.2e-67 260.8 283 51.2
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-67 260.0 275 52.7
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 3.5e-67 259.2 367 45.5
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.5e-67 258.8 283 51.2
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 7.7e-67 258.1 271 53.1
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 7.7e-67 258.1 291 49.5
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 7.7e-67 258.1 305 48.5
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 7.7e-67 258.1 376 43.9
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-66 257.7 275 52.7
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.0e-66 257.7 291 50.5
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.0e-66 257.7 375 44.3
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.3e-66 257.3 283 50.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.9e-66 256.1 388 43.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 5.0e-66 255.4 283 51.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 5.0e-66 255.4 275 52.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 8.6e-66 254.6 343 44.6
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-65 254.2 275 52.0
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.1e-65 254.2 283 50.5
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-65 253.4 315 47.3
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.9e-65 253.4 283 50.5
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.5e-65 253.1 275 52.4
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.3e-65 252.7 275 52.4
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.3e-65 252.7 275 51.3
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.6e-65 251.9 283 50.5
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 5.6e-65 251.9 322 48.1
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 7.3e-65 251.5 285 50.5
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 7.3e-65 251.5 276 51.4
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 7.3e-65 251.5 276 51.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 7.3e-65 251.5 299 48.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 9.5e-65 251.1 287 50.2
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.1e-64 250.0 202 64.4
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.1e-64 250.0 284 50.7
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.8e-64 249.6 290 47.6
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.7e-64 248.8 283 49.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 8.0e-64 248.1 283 48.4
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 3.0e-63 246.1 316 45.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.2e-63 245.4 287 49.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 6.8e-63 245.0 370 42.7
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 8.9e-63 244.6 275 50.5
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 1.2e-62 244.2 315 46.7
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 1.5e-62 243.8 283 48.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.5e-62 243.8 279 49.1
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 4.4e-62 242.3 288 50.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.3e-61 240.7 292 46.2
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.3e-61 240.7 296 47.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.7e-61 239.2 210 61.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 4.9e-61 238.8 299 46.2
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 6.4e-61 238.4 287 49.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 8.3e-61 238.0 288 47.2
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.1e-60 237.7 338 43.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-60 236.5 194 62.4
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 2.4e-60 236.5 354 42.9
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.2e-59 234.2 291 46.4
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.9e-59 231.9 249 54.2
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.0e-58 231.1 295 47.1
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.0e-58 231.1 225 55.1
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.0e-58 231.1 225 55.1
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.3e-58 230.7 283 45.6
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 1.5e-57 227.3 304 44.4
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.9e-57 226.9 202 57.9
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.5e-57 226.5 281 45.9
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 4.7e-56 222.2 363 39.4
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 9.8e-54 214.5 281 43.8
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 8.6e-50 201.4 238 50.4
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 9.5e-49 198.0 271 41.7
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.6e-48 196.1 268 42.5
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.1e-47 193.0 271 42.8
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.2e-46 191.0 352 39.8
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 7.5e-46 188.3 294 38.8
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.6e-40 170.6 283 40.6
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.6e-40 169.5 210 42.4
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.6e-40 169.5 284 35.2
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.7e-40 169.1 210 42.4
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.8e-39 167.2 210 41.9
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.8e-39 167.2 210 41.9
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.3e-39 166.8 283 35.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.1e-39 166.4 202 44.6
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 1.2e-38 164.5 266 36.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-38 164.1 193 44.6
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-38 163.7 210 42.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-38 163.7 265 36.2
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.4e-38 162.9 265 36.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.8e-38 162.2 222 40.1
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.8e-38 162.2 222 41.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 7.6e-38 161.8 283 35.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.7e-37 160.6 284 35.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.7e-37 160.6 268 36.6
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-37 160.2 210 41.4
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 2.2e-37 160.2 210 41.4
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.9e-37 159.8 210 40.5
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.8e-37 159.5 283 35.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.4e-37 158.7 210 41.9
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 6.4e-37 158.7 283 34.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-36 157.9 268 34.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.1e-36 157.9 211 40.3
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.2e-36 156.4 193 43.0
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.1e-36 156.0 267 36.0
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.1e-36 156.0 210 40.5
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 5.4e-36 155.6 266 36.1
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 7.1e-36 155.2 207 40.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 9.2e-36 154.8 266 35.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-35 154.5 209 40.2
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-35 154.1 183 44.8
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-35 154.1 209 40.2
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-35 154.1 183 44.8
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-35 154.1 209 40.2
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.1e-35 153.7 210 40.0
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 3.5e-35 152.9 209 39.2
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-35 152.9 268 34.0
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-34 150.6 188 42.6
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-34 149.8 267 33.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 3.3e-33 146.4 212 37.7
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-32 142.9 186 41.4
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-32 142.9 186 41.4
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 7.6e-30 135.2 117 59.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 9.3e-28 128.3 241 33.2
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 5.1e-26 122.5 157 46.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-23 114.8 137 43.8
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 3.4e-22 109.8 169 38.5
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.1e-20 104.8 284 28.9
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-18 97.8 144 41.7
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-13 80.1 117 40.2
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.8e-10 70.9 213 28.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 5.1e-10 69.3 292 24.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 2.8e-08 63.5 43 69.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.8e-07 60.8 87 41.4


User provided reference genes

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