Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 4.0e-155 551.6 320 100.0
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 3.2e-144 515.4 320 90.0
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 4.8e-124 448.4 302 81.5
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 2.2e-92 343.2 278 73.4
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 2.8e-92 342.8 301 67.4
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 2.9e-89 332.8 317 60.6
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 1.1e-88 330.9 317 57.1
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 7.2e-88 328.2 315 67.3
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 4.4e-85 318.9 332 56.3
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 1.3e-84 317.4 320 59.4
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 4.8e-84 315.5 320 57.2
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 4.8e-84 315.5 316 59.5
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 8.2e-84 314.7 319 54.9
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 2.6e-82 309.7 319 58.0
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 7.7e-82 308.1 363 53.4
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 3.6e-79 299.3 289 58.5
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 4.7e-79 298.9 316 55.4
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 6.1e-79 298.5 328 53.4
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 6.1e-79 298.5 291 56.4
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 1.0e-78 297.7 316 55.7
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.9e-72 276.9 317 52.1
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.6e-71 273.9 295 54.9
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.7e-71 273.1 317 50.5
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 2.3e-70 270.0 313 49.2
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 3.0e-70 269.6 311 50.2
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.2e-70 268.9 318 51.3
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 1.5e-69 267.3 291 52.2
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 3.3e-69 266.2 313 47.0
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 1.4e-67 260.8 320 48.8
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 4.1e-67 259.2 340 47.1
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 5.3e-67 258.8 304 53.3
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 7.0e-67 258.5 277 54.5
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 7.0e-67 258.5 318 49.4
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 9.1e-67 258.1 342 46.5
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 1.2e-66 257.7 291 50.5
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 1.1e-64 251.1 304 52.6
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 2.5e-64 250.0 304 52.3
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 7.2e-64 248.4 291 49.5
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 4.7e-63 245.7 356 43.3
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 8.0e-63 245.0 231 58.0
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 1.8e-62 243.8 302 48.3
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 3.0e-62 243.0 356 43.0
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 6.8e-62 241.9 373 42.6
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 4.4e-61 239.2 250 54.4
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 3.7e-60 236.1 167 79.0
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 5.4e-59 232.3 341 44.0
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 7.0e-59 231.9 315 47.0
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 1.7e-57 227.3 237 55.3
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 3.8e-57 226.1 335 44.8
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 6.5e-57 225.3 313 46.3
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 1.9e-56 223.8 329 45.0
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 5.5e-56 222.2 323 48.6
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 2.1e-55 220.3 319 46.4
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 3.4e-53 213.0 235 53.6
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 5.9e-50 202.2 165 68.5
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 1.3e-49 201.1 374 39.0
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 6.6e-49 198.7 309 42.7
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 8.6e-49 198.4 167 64.1
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 1.5e-48 197.6 320 49.1
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 1.6e-47 194.1 303 41.9
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 2.1e-47 193.7 296 40.9
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 1.0e-46 191.4 268 39.9
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 1.4e-46 191.0 155 70.3
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 2.6e-45 186.8 335 38.5
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 1.1e-40 171.4 291 40.5
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 1.5e-37 161.0 342 36.8
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 2.2e-36 157.1 188 47.9
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 3.2e-35 153.3 264 40.5
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 3.5e-34 149.8 168 51.2
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 1.3e-33 147.9 229 39.3
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 3.3e-32 143.3 128 58.6
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 1.8e-30 137.5 285 34.4
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 3.1e-30 136.7 109 71.6
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 2.9e-28 130.2 125 64.8
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 1.4e-27 127.9 111 71.2
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 7.8e-26 122.1 188 36.2
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 1.3e-20 104.8 198 30.3
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 8.7e-17 92.0 85 54.1
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.6e-15 87.8 290 24.8
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 2.2e-12 77.4 138 34.8
Mapoly0067s0009 Marchantia polymorpha HOM05D007593 ORTHO05D009686 2.2e-12 77.4 275 22.9
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 6.4e-12 75.9 73 65.8
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 1.4e-11 74.7 59 74.6
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 2.7e-10 70.5 114 45.6
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 2.7e-10 70.5 64 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 6.6e-09 65.9 185 25.4
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 8.1e-07 58.9 91 42.9
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 3.1e-06 57.0 82 39.0


User provided reference genes

Program Settings