Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 4.0e-139 498.0 243 100.0
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 2.1e-108 396.0 256 80.9
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 7.1e-80 301.2 261 65.5
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 1.2e-63 247.3 260 53.8
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 2.0e-53 213.4 276 46.7
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 3.8e-49 199.1 185 62.7
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.2e-48 195.7 286 45.5
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 6.3e-44 181.8 283 42.8
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 7.2e-40 168.3 242 43.4
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 2.3e-38 163.3 250 39.6
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.6e-37 159.8 255 36.9
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.3e-35 152.1 244 37.7
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 9.1e-35 151.4 254 35.8
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.1e-32 144.4 233 38.2
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 1.1e-32 144.4 245 37.6
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.9e-32 143.7 225 36.0
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 4.2e-32 142.5 212 37.7
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.7e-31 139.8 254 36.2
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.7e-31 139.8 254 36.2
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 3.6e-31 139.4 229 32.3
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.7e-31 139.0 254 36.2
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.4e-30 137.5 244 36.9
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 1.4e-30 137.5 253 33.2
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 4.0e-30 136.0 131 55.7
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.8e-30 135.2 214 39.3
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 2.0e-29 133.7 244 36.5
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 2.6e-29 133.3 247 38.1
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 4.4e-29 132.5 251 35.5
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 4.4e-29 132.5 244 37.7
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 9.8e-29 131.3 240 35.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 1.3e-28 131.0 245 35.5
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.7e-28 130.6 249 35.3
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.8e-28 129.8 235 34.0
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 3.7e-28 129.4 212 36.8
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 4.8e-28 129.0 209 38.8
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 4.8e-28 129.0 244 35.7
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 8.3e-28 128.3 244 32.8
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.8e-27 127.1 207 36.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 9.1e-27 124.8 246 33.3
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 2.7e-26 123.2 211 32.7
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 3.8e-25 119.4 212 33.0
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.5e-24 117.5 242 31.0
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 6.1e-23 112.1 122 47.5
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 8.0e-23 111.7 229 31.0
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 8.0e-23 111.7 212 31.6
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 5.7e-21 105.5 252 30.2
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 2.2e-20 103.6 141 47.5
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 4.9e-20 102.4 99 47.5
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 4.9e-20 102.4 141 41.8
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 8.3e-20 101.7 240 28.8
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-19 100.9 209 29.7
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.4e-19 100.1 226 30.5
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.6e-18 97.4 228 30.3
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.7e-18 96.7 101 46.5
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.5e-18 96.3 106 39.6
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 7.8e-18 95.1 206 29.1
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.9e-17 92.8 232 28.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 3.3e-16 89.7 209 28.7
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 5.6e-16 89.0 210 30.0
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 5.6e-16 89.0 229 29.7
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.7e-15 85.9 117 41.0
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.0e-14 84.7 87 46.0
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.4e-14 84.3 98 40.8
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 3.1e-14 83.2 208 27.9
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 2.0e-13 80.5 206 28.2
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 5.8e-13 79.0 83 47.0
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 3.7e-12 76.3 52 67.3
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 6.4e-12 75.5 207 30.0
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 6.4e-12 75.5 100 39.0
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 8.3e-12 75.1 104 40.4
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 1.4e-11 74.3 203 27.1
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.9e-11 73.9 209 28.2
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.6e-10 70.9 208 28.4
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 2.7e-10 70.1 113 33.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 6.0e-10 68.9 83 37.3
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 6.0e-10 68.9 83 37.3
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 7.8e-10 68.6 82 40.2
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.7e-09 67.4 84 38.1
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 3.9e-09 66.2 200 27.0
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 6.6e-09 65.5 105 41.9
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 6.6e-09 65.5 75 38.7
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 8.6e-09 65.1 75 38.7
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 8.6e-09 65.1 71 39.4
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.5e-08 64.3 228 25.0
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.9e-08 63.9 124 27.4
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 5.6e-08 62.4 208 25.5
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 5.6e-08 62.4 71 38.0
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 7.3e-08 62.0 95 32.6
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 7.3e-08 62.0 87 32.2
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 9.5e-08 61.6 98 33.7
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-07 61.2 98 33.7
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 1.2e-07 61.2 110 30.9
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.6e-07 60.8 98 33.7
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.1e-07 60.5 71 39.4
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.1e-07 60.5 98 33.7
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.8e-07 60.1 71 36.6
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 2.8e-07 60.1 175 24.6
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-07 60.1 71 39.4
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 2.8e-07 60.1 165 27.3
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 2.8e-07 60.1 165 27.3
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.6e-07 59.7 88 35.2
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 4.7e-07 59.3 250 25.6
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 6.2e-07 58.9 94 29.8
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.2e-07 58.9 71 36.6
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 8.0e-07 58.5 93 31.2
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 8.0e-07 58.5 79 41.8
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 8.0e-07 58.5 79 41.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 1.4e-06 57.8 71 38.0
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.4e-06 57.8 93 31.2
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 1.8e-06 57.4 71 38.0
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 2.3e-06 57.0 71 39.4
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 2.3e-06 57.0 98 32.7
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 3.1e-06 56.6 90 37.8
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 4.0e-06 56.2 76 34.2
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 4.0e-06 56.2 86 34.9
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 4.0e-06 56.2 69 39.1
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 5.2e-06 55.8 80 33.8
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.8e-06 55.5 71 35.2
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 6.8e-06 55.5 221 27.6
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 8.9e-06 55.1 114 33.3


User provided reference genes

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