Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 1.9e-98 362.5 180 100.0
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 8.2e-49 197.6 107 89.7
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.0e-35 154.1 108 75.0
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 3.4e-34 149.1 116 66.4
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 8.6e-30 134.4 108 66.7
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 8.6e-30 134.4 108 63.9
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.5e-29 132.9 108 63.0
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 9.5e-29 131.0 125 58.4
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 4.4e-26 122.1 108 59.3
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.4e-24 117.1 109 56.9
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.4e-24 116.3 110 56.4
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 7.0e-24 114.8 102 57.8
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 4.1e-16 89.0 102 53.9
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 4.1e-16 89.0 102 53.9
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 5.0e-14 82.0 115 48.7
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 3.3e-13 79.3 115 46.1
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 7.3e-13 78.2 109 43.1
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 9.5e-13 77.8 112 48.2
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 4.7e-12 75.5 109 41.3
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 8.0e-12 74.7 111 43.2
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 2.3e-11 73.2 113 46.0
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 5.2e-11 72.0 105 45.7
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 5.2e-11 72.0 125 43.2
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.8e-11 71.6 123 41.5
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 2.0e-10 70.1 102 45.1
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.0e-10 70.1 110 42.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 4.4e-10 68.9 112 40.2
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 5.8e-10 68.6 117 45.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 7.5e-10 68.2 113 38.9
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.3e-09 67.4 108 45.4
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.7e-09 67.0 105 43.8
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.7e-09 67.0 114 42.1
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.2e-09 66.6 117 45.3
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 2.9e-09 66.2 120 45.0
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 3.7e-09 65.9 105 42.9
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 3.7e-09 65.9 105 42.9
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 3.7e-09 65.9 114 41.2
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 3.7e-09 65.9 121 38.8
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 4.9e-09 65.5 111 41.4
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 4.9e-09 65.5 119 37.8
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 4.9e-09 65.5 115 42.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.1e-08 64.3 111 41.4
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.1e-08 64.3 112 40.2
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.1e-08 64.3 112 40.2
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 1.1e-08 64.3 111 40.5
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.1e-08 64.3 111 40.5
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.4e-08 63.9 105 41.9
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 1.9e-08 63.5 105 42.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.9e-08 63.5 119 39.5
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 2.4e-08 63.2 105 41.9
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 2.4e-08 63.2 105 41.9
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 3.2e-08 62.8 106 40.6
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 5.4e-08 62.0 114 40.4
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 9.2e-08 61.2 117 41.9
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.2e-07 60.8 105 47.6
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.6e-07 60.5 107 41.1
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 2.0e-07 60.1 115 40.0
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.0e-07 60.1 117 38.5
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 2.7e-07 59.7 106 40.6
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.5e-07 59.3 110 38.2
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.5e-07 59.3 117 38.5
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.5e-07 59.3 112 42.0
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 4.6e-07 58.9 119 37.0
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 1.0e-06 57.8 120 38.3
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 1.0e-06 57.8 104 39.4
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.7e-06 57.0 109 41.3
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.3e-06 56.6 109 38.5
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.0e-06 56.2 112 35.7
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 3.9e-06 55.8 108 37.0
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.0e-06 55.5 109 40.4
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 5.0e-06 55.5 112 34.8
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 6.6e-06 55.1 112 35.7
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 8.6e-06 54.7 105 35.2


User provided reference genes

Program Settings