Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 0.0e+00 1246.5 678 100.0
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 0.0e+00 1084.7 696 87.4
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 3.3e-260 901.7 703 72.8
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 1.0e-248 863.6 700 71.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 3.0e-208 729.2 692 64.3
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.4e-205 720.3 698 60.9
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.7e-203 713.4 709 61.8
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 7.1e-202 708.0 728 59.8
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 7.1e-202 708.0 728 59.8
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 4.0e-197 692.2 707 58.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 7.8e-193 677.9 723 56.2
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 3.2e-186 656.0 703 57.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.9e-138 497.3 724 45.9
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 1.4e-136 491.1 723 44.7
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.7e-131 474.2 696 44.7
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 4.8e-126 456.1 648 45.5
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.8e-125 454.1 779 42.6
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.1e-125 453.0 705 43.4
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 2.0e-124 450.7 695 43.0
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.0e-123 448.4 707 42.9
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 6.5e-123 445.7 715 42.1
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.6e-121 439.9 657 43.4
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 6.1e-121 439.1 717 40.6
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 8.0e-121 438.7 716 41.8
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 5.7e-119 432.6 717 42.3
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 9.1e-117 425.2 691 43.1
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.6e-116 424.5 706 41.9
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 2.7e-116 423.7 745 40.4
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.5e-116 422.9 731 39.4
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 5.9e-116 422.5 716 41.1
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.7e-115 421.0 701 42.2
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 6.5e-115 419.1 773 39.1
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 8.8e-112 408.7 719 40.9
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.5e-111 407.9 719 41.0
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.0e-111 407.5 731 38.2
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 2.0e-111 407.5 736 38.6
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.3e-110 404.8 705 40.0
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 2.9e-107 393.7 724 40.7
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 1.9e-106 391.0 671 40.8
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 4.7e-105 386.3 666 37.5
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 4.0e-104 383.3 694 42.2
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 5.7e-103 379.4 662 40.6
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 3.6e-97 360.1 631 38.2
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.4e-96 358.2 667 38.5
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 3.1e-96 357.1 701 37.5
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.2e-95 355.1 695 37.8
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 7.5e-95 352.4 676 40.5
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 1.4e-93 348.2 579 39.7
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 2.4e-93 347.4 651 39.6
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 2.4e-93 347.4 716 37.8
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 2.4e-93 347.4 539 44.5
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 4.1e-93 346.7 710 35.9
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 7.0e-93 345.9 899 33.3
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 1.6e-92 344.7 737 38.3
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.0e-92 344.4 737 38.5
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.6e-92 343.2 615 39.8
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 6.0e-92 342.8 812 33.9
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.0e-91 340.5 666 36.8
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.5e-90 338.2 724 36.3
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 3.3e-90 337.0 769 35.4
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 5.6e-90 336.3 778 35.0
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 5.6e-90 336.3 692 36.8
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 2.1e-89 334.3 658 38.4
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 2.1e-89 334.3 658 38.4
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 2.1e-89 334.3 658 38.4
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.8e-88 331.3 644 35.2
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 3.4e-87 327.0 626 36.3
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 4.9e-86 323.2 722 35.5
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 6.4e-86 322.8 653 36.6
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 2.4e-85 320.9 521 39.9
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 4.1e-85 320.1 642 37.5
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 4.1e-85 320.1 229 73.8
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 3.0e-83 313.9 639 36.3
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.8e-80 304.7 738 33.1
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 4.0e-80 303.5 311 55.3
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 2.6e-79 300.8 655 36.6
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 4.4e-79 300.1 708 34.9
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 5.8e-79 299.7 640 36.7
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 5.8e-79 299.7 596 34.4
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 1.3e-78 298.5 736 32.7
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.5e-76 290.4 286 53.5
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.0e-75 288.9 747 33.3
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 4.3e-74 283.5 649 34.1
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 9.6e-66 255.8 699 31.6
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 3.6e-65 253.8 747 31.9
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 1.2e-60 238.8 609 32.2
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 3.0e-59 234.2 633 33.3
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 6.7e-59 233.0 274 46.4
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 8.7e-59 232.6 705 30.5
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 7.4e-58 229.6 274 48.5
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 1.0e-51 209.1 413 36.8
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.3e-43 182.2 496 29.2
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 9.7e-42 176.0 161 60.2
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 6.9e-32 143.3 718 23.8
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 3.4e-31 141.0 379 32.5
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 7.7e-31 139.8 165 52.7
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.7e-28 130.6 409 31.1
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.2e-25 121.7 369 28.7
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 6.9e-24 116.7 151 47.0
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 6.9e-24 116.7 305 37.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 9.1e-24 116.3 162 45.7
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.4e-23 114.4 247 37.2
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.7e-22 112.1 134 49.3
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 6.1e-20 103.6 315 30.8
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 3.3e-18 97.8 255 30.6
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 7.4e-18 96.7 341 32.0
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 7.0e-16 90.1 632 23.1
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 3.2e-13 81.3 105 51.4
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.6e-12 77.8 330 29.1
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 4.7e-12 77.4 126 39.7
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 3.0e-11 74.7 85 44.7
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 7.0e-08 63.5 53 54.7
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 4.5e-07 60.8 256 26.6


User provided reference genes

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