Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.9e-292 1008.4 518 100.0
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.1e-262 908.7 520 91.2
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.4e-234 816.2 519 81.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-227 792.7 518 78.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-209 733.4 520 73.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 7.3e-199 697.6 529 67.9
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 8.9e-197 690.6 529 67.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 7.6e-188 661.0 517 68.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 8.4e-179 630.9 521 65.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 5.3e-149 531.9 518 58.5
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.2e-139 500.0 521 53.9
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.4e-136 490.7 526 54.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.9e-132 475.3 526 51.5
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.7e-126 457.2 522 51.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 9.4e-122 441.4 522 47.5
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.3e-120 436.8 529 47.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.2e-120 435.6 518 49.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.0e-119 433.7 529 47.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 7.5e-119 431.8 523 46.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 6.3e-118 428.7 424 54.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-111 406.8 525 44.0
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.3e-110 402.1 527 45.5
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.1e-109 398.3 527 45.0
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 6.5e-107 392.1 524 43.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 8.6e-107 391.7 530 44.5
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.9e-106 390.6 532 44.5
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.2e-106 388.7 525 44.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 9.5e-106 388.3 529 44.8
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.0e-104 383.3 470 45.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 5.2e-104 382.5 472 46.2
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.7e-103 379.0 533 41.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.9e-102 375.9 525 41.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.4e-101 373.6 525 41.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.1e-101 373.2 529 43.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.1e-101 373.2 529 43.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.7e-100 370.2 468 44.9
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.9e-100 369.0 469 44.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-99 367.9 489 43.8
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.7e-99 367.5 526 43.3
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.0e-99 365.9 530 43.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 7.3e-98 362.1 520 43.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 8.0e-97 358.6 532 41.7
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.0e-96 356.7 525 42.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.4e-93 345.9 476 44.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-92 344.0 529 41.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 5.0e-91 339.3 529 40.5
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.3e-90 336.7 484 40.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.6e-90 335.9 518 39.2
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 7.3e-90 335.5 541 38.6
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.5e-90 335.1 442 42.8
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.6e-89 333.2 526 40.1
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 8.0e-89 332.0 527 41.4
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 5.2e-88 329.3 303 58.7
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-87 328.2 525 38.9
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.4e-86 322.4 510 38.2
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.2e-81 308.1 527 38.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.6e-81 307.8 532 36.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.8e-81 307.0 522 35.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 3.7e-78 296.6 514 36.2
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 5.4e-77 292.7 505 37.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 5.4e-77 292.7 522 37.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.3e-75 287.3 542 35.8
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.5e-74 284.6 525 36.6
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.5e-74 282.0 507 38.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.6e-71 273.9 527 36.4
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 5.8e-71 272.7 533 36.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.4e-69 267.3 526 35.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.4e-69 266.2 516 35.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 5.4e-69 266.2 485 36.9
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 7.1e-69 265.8 421 38.7
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 7.1e-69 265.8 496 35.5
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.2e-68 265.0 533 36.0
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-68 264.2 515 35.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 7.8e-68 262.3 534 35.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.6e-67 259.2 526 35.4
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.3e-66 256.5 526 34.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.6e-65 253.4 504 35.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.7e-65 253.1 501 35.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 8.1e-65 252.3 504 34.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.1e-65 252.3 519 33.7
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-63 248.4 260 53.5
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.5e-63 248.1 525 34.7
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-63 248.1 530 35.1
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.0e-63 247.7 526 33.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 8.4e-62 242.3 519 33.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.4e-61 241.5 497 32.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.4e-61 240.7 510 32.5
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.0e-59 235.3 522 34.7
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.0e-59 233.8 520 32.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.5e-58 230.7 510 31.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 3.3e-58 230.3 287 44.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-57 228.4 272 45.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-57 228.4 281 44.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.3e-57 228.4 513 32.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.6e-57 228.0 270 47.0
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.6e-57 228.0 478 34.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.8e-56 224.6 505 32.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 9.0e-56 222.2 523 33.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.2e-55 221.9 498 32.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.2e-55 221.9 515 33.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.5e-55 221.5 502 32.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.5e-55 221.5 500 31.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.4e-55 220.3 387 35.4
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.4e-55 220.3 528 32.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 4.5e-55 219.9 507 32.5
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 5.8e-55 219.5 500 31.6
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.9e-54 217.2 524 34.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.9e-53 214.5 242 49.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.2e-53 213.8 512 30.3
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 3.2e-53 213.8 385 38.7
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.6e-52 211.5 248 45.2
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.7e-52 210.7 387 35.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.3e-51 207.6 549 32.1
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 3.9e-51 206.8 507 31.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.1e-51 206.5 507 29.4
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.1e-51 206.5 507 29.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.3e-50 203.8 504 31.7
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.3e-50 203.8 391 35.5
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.3e-50 203.8 518 29.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 9.6e-50 202.2 524 30.2
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.1e-49 201.1 443 32.1
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.2e-49 199.5 498 31.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.4e-48 198.4 480 32.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.2e-47 195.3 484 32.2
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 9.9e-47 192.2 412 32.3
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.9e-46 189.9 526 30.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.4e-45 188.3 287 39.0
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.9e-45 188.0 269 42.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.4e-45 187.6 541 28.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.2e-45 186.8 496 32.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 7.1e-45 186.0 403 30.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 9.3e-45 185.7 264 40.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.6e-44 184.9 402 31.3
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.6e-44 184.9 252 44.4
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.7e-43 179.1 496 28.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.8e-41 174.1 403 31.0
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-40 172.2 263 43.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 3.1e-40 170.6 589 28.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.2e-38 164.5 297 37.7
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.5e-36 157.1 519 27.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 6.0e-36 156.4 258 36.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.9e-36 156.0 499 25.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-35 154.5 448 26.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 3.9e-35 153.7 513 27.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 5.7e-34 149.8 514 26.7
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 7.4e-34 149.4 253 40.7
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 9.7e-34 149.1 521 27.1
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.2e-33 147.9 448 26.1
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 3.7e-33 147.1 410 29.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.7e-33 147.1 476 27.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.4e-32 145.2 181 45.3
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 4.1e-32 143.7 181 45.3
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 7.6e-31 139.4 516 26.4
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 7.6e-31 139.4 257 38.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 3.2e-29 134.0 509 24.8
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 5.5e-29 133.3 513 24.8
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.6e-28 131.7 516 25.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.0e-27 129.0 507 24.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.4e-27 128.6 508 24.8
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 5.1e-27 126.7 122 61.5
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.3e-24 116.7 261 32.6
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 5.0e-22 110.2 196 33.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.2e-21 107.5 116 42.2
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 7.2e-21 106.3 268 31.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.6e-20 105.1 258 30.2
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.6e-20 104.0 274 29.9
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.6e-20 104.0 191 39.3
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 6.1e-20 103.2 127 40.2
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.4e-18 96.3 237 32.5
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 9.7e-18 95.9 275 28.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.2e-17 94.7 275 27.6
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.8e-17 94.4 144 40.3
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 8.2e-17 92.8 250 30.0
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.2e-12 79.0 111 36.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.5e-10 72.0 141 34.8


User provided reference genes

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