Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 8.7e-171 603.6 315 100.0
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 2.2e-153 545.8 317 92.7
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 3.8e-142 508.4 297 86.5
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 4.5e-111 405.2 308 66.2
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.7e-105 386.7 371 56.3
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 7.8e-103 377.9 316 61.7
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.0e-102 377.5 315 62.5
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 3.0e-102 375.9 350 56.6
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 9.5e-101 370.9 315 60.6
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 8.0e-100 367.9 318 59.1
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 4.4e-98 362.1 323 61.0
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 2.2e-97 359.8 327 59.9
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 2.9e-97 359.4 320 64.7
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 1.4e-96 357.1 327 58.1
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 9.2e-96 354.4 201 88.6
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 1.2e-95 354.0 313 59.4
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.2e-95 354.0 333 57.4
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 3.5e-95 352.4 325 58.5
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 7.8e-95 351.3 250 73.6
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 1.7e-94 350.1 286 62.6
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 3.9e-94 349.0 319 56.4
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 3.3e-93 345.9 319 57.1
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 7.3e-93 344.7 316 56.6
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.4e-91 340.5 311 56.9
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 1.4e-91 340.5 314 59.9
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 2.3e-91 339.7 315 55.9
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 4.0e-91 339.0 316 55.4
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 5.2e-91 338.6 325 55.1
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 2.0e-90 336.7 308 60.1
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 3.4e-90 335.9 325 54.5
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 3.4e-90 335.9 322 57.8
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 4.4e-90 335.5 316 55.4
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 7.5e-90 334.7 319 58.0
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 7.5e-90 334.7 315 57.5
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 9.9e-90 334.3 317 55.8
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 1.3e-89 334.0 312 57.4
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 1.3e-89 334.0 317 53.9
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 2.9e-89 332.8 309 57.9
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 6.4e-89 331.6 319 58.6
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 6.4e-89 331.6 317 59.3
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 2.4e-88 329.7 330 59.4
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 5.4e-88 328.6 322 53.7
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 1.2e-87 327.4 327 54.4
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 3.5e-87 325.9 321 54.2
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 3.5e-87 325.9 321 54.2
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 3.5e-87 325.9 326 54.0
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 1.7e-86 323.6 317 58.4
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.7e-86 323.6 317 58.4
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 1.7e-86 323.6 319 54.5
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 3.9e-86 322.4 316 54.1
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 5.1e-86 322.0 324 54.9
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 1.1e-85 320.9 368 48.9
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 3.3e-85 319.3 324 55.2
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 4.3e-85 318.9 326 53.7
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 1.6e-84 317.0 327 52.6
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.6e-84 317.0 306 53.6
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 2.1e-84 316.6 316 55.1
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 2.8e-84 316.2 291 62.9
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 6.2e-84 315.1 320 53.1
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 2.4e-83 313.2 318 58.8
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 2.6e-82 309.7 325 53.5
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 3.4e-82 309.3 315 54.9
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 1.3e-81 307.4 317 53.0
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 2.2e-81 306.6 318 52.5
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 1.9e-80 303.5 315 54.9
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 5.4e-80 302.0 273 56.8
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 5.4e-80 302.0 328 53.4
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 1.6e-79 300.4 325 53.8
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 2.3e-78 296.6 331 52.3
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 3.0e-78 296.2 243 60.9
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 3.9e-78 295.8 325 53.2
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 3.9e-78 295.8 325 53.2
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 8.7e-78 294.7 325 52.0
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.9e-77 293.5 298 54.4
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 2.1e-76 290.0 329 50.2
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 8.1e-76 288.1 328 48.8
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 9.0e-75 284.6 326 52.5
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 1.5e-74 283.9 328 52.1
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 5.8e-74 282.0 331 50.2
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 5.8e-74 282.0 215 66.0
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.9e-74 281.2 242 59.1
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 1.1e-72 277.7 329 48.6
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 1.4e-72 277.3 334 53.0
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 9.3e-72 274.6 318 48.7
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 3.5e-71 272.7 260 57.3
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 6.6e-70 268.5 318 48.7
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 4.3e-69 265.8 268 50.0
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 1.6e-68 263.8 254 53.1
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 2.1e-68 263.5 343 44.9
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.1e-67 261.2 322 46.9
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 2.0e-66 256.9 257 56.4
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 1.3e-65 254.2 256 53.1
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 2.2e-65 253.4 221 60.6
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 2.2e-65 253.4 221 60.6
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 2.2e-65 253.4 214 57.9
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 9.3e-64 248.1 251 53.0
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 1.6e-63 247.3 254 51.6
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 7.9e-63 245.0 311 44.1
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 1.1e-61 241.1 140 80.7
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.4e-59 234.2 187 59.9
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 5.8e-58 228.8 238 52.5
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 1.3e-57 227.6 316 43.7
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 2.4e-56 223.4 237 52.7
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 1.6e-55 220.7 318 44.7
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 1.3e-54 217.6 315 42.9
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 1.1e-53 214.5 243 52.3
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 6.2e-52 208.8 109 91.7
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 5.1e-46 189.1 219 49.8
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.1e-45 188.0 281 41.6
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 7.4e-45 185.3 219 49.3
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 6.3e-44 182.2 305 37.0
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.4e-43 180.3 184 52.7
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.3e-41 174.5 233 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 1.7e-41 174.1 217 45.2
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.2e-41 173.7 122 64.8
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 3.2e-40 169.9 199 43.7
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 2.6e-34 150.2 91 76.9
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 5.5e-32 142.5 192 45.3
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 9.7e-29 131.7 78 74.4
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 4.8e-28 129.4 77 79.2
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 1.8e-19 100.9 244 35.2
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 3.1e-19 100.1 101 50.5
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 2.0e-18 97.4 169 37.3
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.0e-17 95.1 189 34.9
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.3e-14 84.0 56 67.9
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 5.2e-14 82.8 85 48.2
HPP92_020431 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.3e-12 78.2 143 37.1
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 4.8e-12 76.3 141 36.9
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 5.9e-10 69.3 49 67.3


User provided reference genes

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