Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 8.8e-276 953.0 473 100.0
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.9e-214 749.2 446 83.9
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.8e-213 745.3 471 77.3
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.1e-212 743.4 452 81.0
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 3.1e-212 741.9 444 82.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.2e-212 741.1 446 82.3
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 7.6e-211 737.3 446 81.6
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.9e-210 735.3 437 82.4
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.1e-209 733.4 459 77.1
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.4e-209 733.0 446 80.0
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 5.4e-209 731.1 459 76.9
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.6e-208 728.0 472 77.1
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.3e-207 726.5 457 77.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.3e-207 725.7 470 76.6
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 6.6e-207 724.2 457 76.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 6.6e-207 724.2 452 77.9
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 6.6e-207 724.2 467 77.1
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 8.7e-207 723.8 476 76.1
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 8.7e-207 723.8 448 79.5
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.1e-206 723.4 439 80.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.5e-206 723.0 439 80.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.9e-206 722.6 443 79.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 4.3e-206 721.5 456 78.3
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 7.3e-206 720.7 456 78.1
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 7.3e-206 720.7 452 77.2
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-205 719.5 468 76.1
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-205 719.5 468 76.1
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.6e-205 719.5 460 77.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.6e-205 719.5 460 77.2
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.1e-205 717.2 443 77.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 8.1e-205 717.2 467 76.0
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.1e-204 716.8 461 77.7
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.1e-204 716.8 452 77.0
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.1e-204 716.8 466 76.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.1e-204 715.3 460 77.0
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.0e-204 714.9 452 76.8
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 4.0e-204 714.9 440 79.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.3e-204 714.5 470 76.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.3e-204 714.5 445 78.2
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.0e-204 713.8 449 78.0
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.0e-204 713.8 449 78.0
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.5e-203 713.0 463 76.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.5e-203 713.0 466 74.7
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.0e-203 712.6 447 78.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 2.0e-203 712.6 449 77.5
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.6e-203 712.2 462 76.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.6e-203 712.2 473 75.7
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.5e-203 711.4 444 77.7
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 9.9e-203 710.3 444 77.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.7e-202 709.5 470 75.5
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.9e-202 708.8 448 76.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.9e-202 708.0 445 76.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.4e-202 707.6 468 75.2
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.1e-201 706.8 441 77.6
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.4e-201 706.4 431 78.2
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.4e-201 706.4 452 76.1
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.4e-201 705.7 453 77.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 7.1e-201 704.1 461 74.8
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.2e-200 703.4 459 74.3
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.1e-200 702.6 457 74.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.0e-199 700.3 431 78.9
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.3e-199 699.9 428 77.1
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.8e-199 699.5 429 79.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.0e-199 698.7 452 75.7
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 6.7e-199 697.6 455 74.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 6.7e-199 697.6 429 78.8
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 6.7e-199 697.6 458 75.8
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.9e-198 696.0 444 76.6
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 2.5e-198 695.7 428 79.0
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.5e-198 695.7 463 74.7
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 4.3e-198 694.9 451 74.1
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 5.6e-198 694.5 451 74.5
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 5.6e-198 694.5 458 76.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 5.6e-198 694.5 487 72.1
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.3e-197 693.3 423 79.7
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.3e-197 693.3 468 72.4
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.1e-197 692.6 430 77.9
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.8e-197 692.2 448 76.1
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.8e-197 692.2 454 74.2
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.8e-197 692.2 447 74.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 3.7e-197 691.8 442 76.0
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 6.2e-197 691.0 452 74.8
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-196 690.3 442 75.3
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.1e-196 690.3 442 75.8
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-196 690.3 445 73.9
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-196 690.3 445 74.2
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.8e-196 689.5 449 76.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 3.1e-196 688.7 462 72.7
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.1e-196 688.7 430 77.4
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-195 686.8 439 75.4
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-195 685.6 440 75.2
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.3e-194 683.3 448 74.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.7e-194 682.9 437 77.1
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.7e-194 682.9 445 73.5
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.2e-194 682.6 473 71.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.9e-194 682.2 434 77.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 3.8e-194 681.8 447 74.9
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.9e-193 679.5 449 74.8
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.1e-192 676.0 446 74.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.9e-191 671.8 424 76.2
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 6.7e-191 671.0 446 74.2
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 4.3e-190 668.3 452 72.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 7.4e-190 667.5 430 77.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 9.6e-190 667.2 423 76.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.7e-189 665.2 444 72.5
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 4.8e-189 664.8 450 72.2
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.2e-189 664.5 444 74.3
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.2e-189 664.5 440 72.7
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-188 663.7 443 73.4
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.4e-188 663.3 405 80.5
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.7e-186 656.4 441 72.6
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.7e-186 656.4 462 70.3
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.8e-186 655.2 399 79.4
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.5e-186 654.4 401 79.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.4e-185 653.3 401 79.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.2e-185 651.7 429 73.0
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 9.3e-185 650.6 429 72.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.2e-184 650.2 439 71.5
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-184 649.4 452 70.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-184 649.4 452 70.1
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 6.0e-184 647.9 424 73.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 6.0e-184 647.9 452 70.1
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.0e-183 647.1 450 70.9
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.8e-183 646.4 422 75.1
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.9e-183 645.2 463 69.3
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.5e-182 643.3 430 72.8
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.9e-182 642.9 424 73.3
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 5.7e-182 641.3 422 74.9
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 7.4e-182 641.0 424 73.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.3e-181 640.2 424 73.1
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.6e-181 639.8 424 73.1
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 8.2e-181 637.5 451 68.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-180 636.7 454 68.9
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 8.5e-178 627.5 380 79.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.5e-177 624.8 444 71.4
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.1e-176 621.3 462 68.2
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 4.3e-174 615.1 384 76.8
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.4e-174 614.4 364 80.5
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.3e-173 613.6 385 76.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.0e-171 606.3 450 66.0
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 4.5e-171 605.1 388 76.3
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.8e-167 593.2 371 79.2
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.7e-160 569.3 445 67.4
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 1.7e-157 560.1 386 71.2
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.5e-155 552.0 433 64.2
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-147 527.3 422 62.8
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.5e-146 521.5 418 63.9
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-145 520.4 462 60.2
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.7e-141 505.8 469 57.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.0e-132 474.9 448 55.1
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.8e-119 433.7 306 68.6
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.2e-117 426.8 287 71.1
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 4.7e-112 409.1 236 82.2
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 5.2e-111 405.6 435 50.8
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.8e-110 402.1 270 72.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.6e-104 384.0 231 79.2
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.7e-101 374.0 448 45.3
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 3.9e-98 362.8 436 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.9e-93 346.7 413 45.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.9e-76 290.8 277 58.8
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 7.6e-70 268.9 161 81.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.7e-53 214.5 148 73.6
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-47 195.3 113 83.2
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.3e-42 177.6 127 65.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.6e-41 174.1 437 31.4
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.9e-38 162.9 90 84.4
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 5.0e-37 159.8 450 30.9
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.1e-31 140.6 75 89.3
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.6e-25 120.9 107 58.9
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 9.8e-17 92.4 62 71.0
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 4.3e-12 77.0 79 53.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.7e-08 63.9 47 66.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.3e-08 62.8 47 63.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 9.2e-07 59.3 228 25.9
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.2e-06 58.9 194 24.2
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.5e-06 57.4 197 25.4


User provided reference genes

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