Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 2244.2 1238 100.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1684.8 1222 74.9
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1667.1 1226 74.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1666.0 1280 72.8
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1652.5 1277 72.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1639.8 1221 71.7
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1637.5 1318 67.7
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1614.4 1279 69.8
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1613.2 1255 70.7
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1612.0 1281 69.1
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1610.5 1283 68.8
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1609.0 1224 71.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1608.2 1352 68.3
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1569.3 1308 66.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1565.8 1282 68.0
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1564.7 1281 68.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1564.3 1279 66.5
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1563.9 1279 67.1
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1561.6 1237 69.9
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1560.4 1316 67.8
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1555.0 1240 68.8
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1233 69.9
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1545.8 1180 70.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1545.4 1205 70.0
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1542.7 1285 67.1
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1540.8 1227 67.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1536.9 1350 64.7
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1533.1 1226 67.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1532.7 1219 68.8
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1530.8 1198 68.4
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1526.1 1282 65.3
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1519.6 1234 65.5
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1518.8 1280 66.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1518.1 1289 66.9
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1515.0 1284 64.6
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1511.9 1227 65.9
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1509.6 1205 70.8
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1507.7 1205 69.1
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1505.7 1236 67.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1504.6 1233 67.9
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1503.8 1286 64.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1502.6 1303 65.8
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1283 65.9
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1494.6 1223 69.3
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1494.6 1205 68.1
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1493.0 1234 66.9
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1488.0 1272 64.0
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1487.2 1200 67.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1478.4 1221 65.7
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1283 63.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1469.9 1217 67.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1464.1 1248 66.3
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1463.7 1273 62.8
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1282 62.6
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1462.2 1232 65.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1456.4 1292 63.5
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1454.9 1280 64.0
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1453.3 1231 63.7
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1446.4 1282 62.9
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1439.1 1228 65.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1438.3 1281 62.8
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1435.2 1286 63.1
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1435.2 1216 66.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1431.8 1278 65.6
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1245 63.1
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1426.4 1217 64.3
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1421.0 1278 64.3
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1416.7 1229 64.0
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1412.1 1293 64.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1407.1 1321 62.0
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1406.0 1292 62.8
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1405.6 1292 62.8
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1405.2 1253 61.9
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1402.1 1230 63.7
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1390.9 1230 62.4
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1387.9 1314 60.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1238 64.1
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1176 64.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1372.8 1308 59.9
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1372.1 1283 61.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1371.3 1194 64.3
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1369.4 1220 64.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1366.3 1307 60.6
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1364.7 1195 65.2
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1364.0 1188 64.6
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1362.4 1231 62.5
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1355.9 1190 64.8
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1355.9 1190 64.8
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1230 62.7
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1339.7 1311 57.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1316.6 1077 67.1
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1297.0 1236 59.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1270.4 1264 57.4
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1266.9 1219 60.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1256.1 1174 60.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1226.8 1220 57.8
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1201.0 943 72.0
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1200.3 1205 56.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1174.5 1223 54.6
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1152.9 1269 51.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1151.3 1107 61.1
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1150.2 1214 54.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1141.3 1332 48.9
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1132.5 1211 52.6
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 3.7e-310 1068.5 732 77.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 3.9e-307 1058.5 1258 49.8
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.8e-286 988.8 1223 49.1
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.5e-285 986.1 1239 48.0
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 3.3e-274 949.1 1255 47.4
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 4.8e-257 892.1 686 70.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 7.8e-215 751.9 1118 42.8
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.6e-191 672.9 536 71.5
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 7.9e-175 619.0 429 74.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.0e-170 604.4 447 73.2
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 4.5e-162 576.6 441 73.2
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 3.5e-159 567.0 840 47.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.5e-152 544.3 660 55.0
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 5.1e-150 536.6 1224 36.2
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 7.9e-143 512.7 1211 34.6
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.8e-142 511.5 591 49.1
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.1e-139 500.4 1217 31.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.3e-137 495.4 1226 31.1
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.3e-129 468.8 1186 33.1
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.6e-127 460.7 1132 31.0
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.8e-126 458.4 1011 35.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.3e-113 414.8 1006 34.0
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.6e-95 355.5 1289 26.5
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.7e-92 344.4 332 58.7
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 3.5e-74 284.6 491 38.5
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 3.0e-73 281.6 491 38.3
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 9.9e-69 266.5 216 64.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.6e-42 179.5 200 53.0
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.4e-32 144.1 331 31.4
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 9.7e-32 143.7 1222 25.1
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.8e-31 142.1 128 55.5
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.6e-29 135.6 1258 24.6
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 8.5e-28 130.6 143 51.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 7.2e-27 127.5 187 41.7
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.3e-25 122.5 83 69.9
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.3e-23 116.7 136 50.0
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-20 106.7 108 54.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.5e-19 101.3 57 82.5
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 9.4e-19 100.5 112 55.4
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.7e-18 99.0 61 78.7
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.0e-17 97.1 71 63.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.5e-16 93.2 73 60.3
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 7.5e-16 90.9 72 61.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 7.5e-16 90.9 100 51.0
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.8e-14 86.3 83 48.2
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 3.5e-13 82.0 173 37.0
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.4e-08 65.5 39 76.9
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.4e-08 65.5 45 64.4
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 3.4e-08 65.5 45 64.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.3e-07 63.5 86 47.7
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.1e-06 60.5 50 62.0
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 1.4e-06 60.1 41 75.6
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 7.0e-06 57.8 66 50.0


User provided reference genes

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