Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 6.9e-96 354.0 182 100.0
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.0e-82 309.3 174 90.8
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.4e-80 303.1 177 88.1
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 9.1e-80 300.4 162 93.8
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.6e-79 299.7 179 84.9
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.0e-79 299.3 180 84.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 3.5e-79 298.5 171 86.5
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.7e-78 296.2 179 83.2
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.2e-78 295.8 177 81.4
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.0e-78 294.7 162 91.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 6.5e-78 294.3 171 83.6
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.1e-77 293.5 178 80.9
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.5e-77 293.1 161 91.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 1.9e-77 292.7 172 84.3
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.9e-77 292.7 171 83.0
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 2.5e-77 292.4 171 86.0
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 3.2e-77 292.0 171 85.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 9.4e-77 290.4 171 82.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 1.2e-76 290.0 179 82.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.2e-76 290.0 178 82.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.6e-76 289.7 171 84.8
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.7e-76 288.9 162 87.0
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.7e-76 288.9 171 81.3
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.7e-76 288.9 178 79.8
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.7e-76 288.9 178 79.8
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.7e-76 288.9 178 79.8
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.6e-76 288.5 178 80.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 3.6e-76 288.5 171 83.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.4e-75 286.6 171 80.7
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.4e-75 286.6 162 87.7
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-75 286.6 178 79.2
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.4e-75 286.6 178 79.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.8e-75 286.2 178 79.2
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.3e-75 285.8 162 88.9
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 5.2e-75 284.6 169 84.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.2e-75 284.6 162 88.3
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 5.2e-75 284.6 162 87.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 5.2e-75 284.6 172 82.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 8.8e-75 283.9 177 82.5
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 1.2e-74 283.5 169 83.4
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 1.5e-74 283.1 171 81.3
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 2.0e-74 282.7 179 80.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.0e-74 282.7 169 82.8
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 2.0e-74 282.7 156 89.7
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-74 282.3 178 78.7
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.6e-74 282.3 171 83.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.4e-74 282.0 178 79.2
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-74 282.0 178 79.2
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-74 282.0 160 85.0
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.4e-74 281.6 171 80.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 4.4e-74 281.6 160 85.0
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 4.4e-74 281.6 169 83.4
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 5.7e-74 281.2 170 81.2
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 7.5e-74 280.8 170 81.8
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 7.5e-74 280.8 160 84.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 9.8e-74 280.4 160 83.8
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 9.8e-74 280.4 160 83.8
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 9.8e-74 280.4 160 83.8
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 9.8e-74 280.4 173 82.1
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 9.8e-74 280.4 173 82.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 9.8e-74 280.4 166 82.5
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.3e-73 280.0 176 80.7
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.7e-73 279.6 173 80.9
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-73 279.3 157 89.8
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.7e-73 278.5 173 81.5
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 3.7e-73 278.5 199 73.4
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.8e-73 278.1 168 81.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 6.3e-73 277.7 160 85.6
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 6.3e-73 277.7 168 83.3
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 8.3e-73 277.3 168 82.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.3e-73 277.3 171 81.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-72 275.8 178 79.8
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 2.4e-72 275.8 173 78.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 3.1e-72 275.4 165 84.8
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.1e-72 275.4 176 76.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 4.1e-72 275.0 182 76.9
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.4e-72 274.6 177 78.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 9.1e-72 273.9 162 83.3
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.2e-71 273.5 164 82.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.2e-71 273.5 177 78.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 4.5e-71 271.6 199 71.4
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 5.9e-71 271.2 177 77.4
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.0e-70 270.4 177 75.1
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 5.0e-70 268.1 146 90.4
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 6.5e-70 267.7 177 75.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 8.5e-70 267.3 167 81.4
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.2e-69 265.4 174 77.0
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.2e-69 265.0 177 73.4
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.4e-69 263.8 175 77.7
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.2e-68 263.5 168 78.6
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.2e-68 263.5 177 76.3
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.6e-68 263.1 177 73.4
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 4.7e-68 261.5 177 72.3
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 4.7e-68 261.5 164 77.4
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.1e-68 261.2 175 76.6
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 6.1e-68 261.2 161 82.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.4e-67 260.0 179 74.9
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.8e-67 259.6 182 72.0
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 5.2e-67 258.1 175 72.0
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 8.8e-67 257.3 182 70.3
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.5e-66 256.5 159 79.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 3.4e-66 255.4 179 73.7
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 3.4e-66 255.4 178 73.6
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 4.4e-66 255.0 180 76.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 4.4e-66 255.0 193 67.9
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 4.4e-66 255.0 164 79.3
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 7.5e-66 254.2 172 71.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 7.5e-66 254.2 164 77.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 9.8e-66 253.8 140 91.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.8e-65 252.3 164 76.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 4.9e-65 251.5 154 81.8
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 6.3e-65 251.1 164 75.0
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 1.4e-64 250.0 160 80.0
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.4e-64 250.0 187 72.2
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 9.2e-64 247.3 164 74.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 9.2e-64 247.3 167 74.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.2e-63 246.9 138 87.0
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 5.0e-62 241.5 171 70.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.9e-61 239.6 190 67.9
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.1e-60 236.1 164 70.7
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 6.1e-60 234.6 140 83.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-59 233.4 155 74.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 3.0e-59 232.3 133 88.7
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.0e-59 231.9 158 69.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 8.9e-59 230.7 127 88.2
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.5e-58 229.9 157 69.4
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.6e-58 229.2 161 68.9
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.4e-57 224.6 164 66.5
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 9.2e-56 220.7 137 76.6
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.0e-55 219.5 127 82.7
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.7e-54 216.5 132 81.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.0e-51 207.2 123 85.4
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.0e-51 207.2 139 75.5
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.0e-50 203.0 127 79.5
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.0e-50 203.0 137 76.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.4e-50 201.8 138 76.1
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.4e-50 201.8 172 62.2
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-48 197.2 134 70.9
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 4.1e-48 195.3 116 85.3
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.5e-45 186.8 141 61.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.3e-45 185.3 167 55.1
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.8e-44 182.6 105 85.7
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.7e-41 173.3 116 70.7
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-41 172.6 126 70.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 7.1e-40 167.9 97 82.5
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 9.5e-37 157.5 148 51.4
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.2e-36 157.1 126 69.8
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 2.8e-36 156.0 100 77.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.4e-34 148.7 161 57.8
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 5.8e-34 148.3 76 96.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 9.9e-34 147.5 77 93.5
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-33 147.1 166 57.8
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.9e-33 146.0 74 93.2
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-32 143.3 112 69.6
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 4.1e-32 142.1 132 50.8
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 4.0e-27 125.6 100 66.0
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 9.9e-26 120.9 80 75.0
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 6.4e-25 118.2 98 63.3
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 4.2e-24 115.5 126 50.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.3e-24 114.4 72 83.3
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-18 97.4 70 68.6
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-16 90.5 46 89.1
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-15 87.0 61 73.8
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 6.0e-15 85.1 52 78.8
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.0e-14 84.3 42 95.2
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-14 84.0 42 92.9
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 9.6e-13 77.8 125 44.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.4e-10 69.3 37 83.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 5.8e-10 68.6 69 62.3
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 7.1e-08 61.6 32 90.6
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 2.3e-06 56.6 47 61.7
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 2.3e-06 56.6 91 35.2
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 3.0e-06 56.2 32 87.5
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 6.7e-06 55.1 39 74.4
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 6.7e-06 55.1 39 74.4


User provided reference genes

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