Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.2e-116 421.8 214 100.0
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 7.6e-102 374.0 214 89.7
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.1e-100 370.2 214 87.9
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.4e-100 369.8 214 88.8
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.4e-100 369.8 214 88.3
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.5e-100 369.0 213 88.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.5e-100 369.0 214 87.9
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.5e-100 367.9 213 88.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 9.3e-100 367.1 214 86.4
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.2e-99 366.7 213 86.9
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 2.7e-99 365.5 214 86.4
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.5e-99 365.2 214 87.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 4.6e-99 364.8 213 84.5
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.6e-99 364.8 214 87.4
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 7.9e-99 364.0 214 86.0
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 7.9e-99 364.0 215 88.4
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.0e-98 363.6 213 85.9
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 2.3e-98 362.5 214 86.0
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 3.0e-98 362.1 213 86.9
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 6.7e-98 360.9 214 84.6
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 8.7e-98 360.5 206 88.3
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.1e-97 360.1 203 90.1
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.1e-97 360.1 214 86.9
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.5e-97 359.8 214 86.4
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.5e-97 359.8 214 86.4
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.5e-97 359.8 215 87.9
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.5e-97 359.0 214 86.0
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 2.5e-97 359.0 214 85.0
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.5e-97 359.0 214 85.0
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 3.3e-97 358.6 214 87.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 4.3e-97 358.2 212 86.8
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 4.3e-97 358.2 214 86.4
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.3e-97 358.2 213 85.0
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.4e-97 357.5 206 86.4
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 9.6e-97 357.1 216 85.2
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.3e-96 356.7 214 84.6
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.3e-96 356.7 216 85.2
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.3e-96 356.7 214 85.5
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 2.1e-96 355.9 216 85.2
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.1e-96 355.9 213 85.4
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.1e-96 355.9 213 85.4
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.1e-96 355.9 213 85.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 2.8e-96 355.5 213 84.0
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.8e-96 354.8 203 88.2
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 8.2e-96 354.0 197 91.9
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-95 353.2 214 85.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.4e-95 352.4 196 90.8
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 4.1e-95 351.7 203 88.7
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 4.1e-95 351.7 216 82.4
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 5.3e-95 351.3 214 83.2
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 5.3e-95 351.3 214 83.2
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 9.0e-95 350.5 214 84.6
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.5e-94 349.7 204 86.8
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.5e-94 349.7 214 84.1
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.6e-94 349.0 195 89.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 5.9e-94 347.8 213 85.0
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 5.9e-94 347.8 204 86.3
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 5.9e-94 347.8 214 83.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.0e-93 347.1 204 86.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.0e-93 347.1 204 86.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.0e-93 347.1 204 86.3
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.3e-93 346.7 213 82.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.9e-93 345.5 200 87.0
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.9e-93 345.5 205 87.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 3.8e-93 345.1 212 83.0
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 6.5e-93 344.4 213 82.2
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 6.5e-93 344.4 216 84.3
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 6.5e-93 344.4 214 83.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.4e-92 343.2 212 84.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.4e-92 343.2 201 85.6
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.4e-92 343.2 213 83.6
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 5.5e-92 341.3 214 82.2
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 5.5e-92 341.3 192 88.5
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 9.3e-92 340.5 205 82.9
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.1e-91 339.3 205 82.9
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.1e-91 339.3 205 82.9
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.1e-91 339.3 214 81.8
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.7e-91 339.0 219 83.1
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 3.5e-91 338.6 205 84.4
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 4.6e-91 338.2 213 80.8
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 4.6e-91 338.2 213 81.2
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.9e-91 337.4 192 88.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 7.9e-91 337.4 214 79.9
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 7.9e-91 337.4 216 79.2
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.0e-90 337.0 203 83.3
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.0e-90 337.0 206 83.5
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.0e-90 337.0 213 80.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.3e-90 336.7 201 85.6
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.8e-90 336.3 215 80.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.8e-90 336.3 205 82.0
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.8e-90 336.3 214 81.3
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.8e-90 336.3 209 83.3
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.0e-90 335.5 213 81.2
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 3.0e-90 335.5 216 81.5
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.0e-90 335.5 192 85.4
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.7e-90 334.3 196 85.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.1e-89 333.6 216 78.7
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.5e-89 333.2 193 87.0
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.5e-89 332.4 214 79.4
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.3e-89 331.6 211 81.0
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 4.3e-89 331.6 214 81.3
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.8e-87 326.2 214 78.5
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 2.4e-87 325.9 215 80.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 3.8e-85 318.5 214 77.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 5.0e-85 318.2 201 80.6
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 6.5e-85 317.8 196 82.7
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 4.6e-83 311.6 185 82.7
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.0e-82 310.5 185 84.3
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 3.9e-82 308.5 342 53.8
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.9e-82 308.5 184 81.5
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.3e-81 305.4 184 82.6
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.0e-77 293.9 179 85.5
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 5.0e-77 291.6 196 80.1
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.1e-76 290.4 157 93.6
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.2e-75 287.0 168 88.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 7.9e-75 284.3 194 79.9
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 9.1e-71 270.8 166 85.5
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 3.6e-67 258.8 150 86.7
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.0e-66 257.3 157 84.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 6.7e-66 254.6 169 77.5
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 8.8e-66 254.2 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.1e-63 247.3 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.8e-63 246.5 192 66.7
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.7e-59 232.6 160 70.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 4.7e-59 231.9 135 88.1
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-58 230.7 193 67.9
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 3.0e-58 229.2 214 60.7
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 8.5e-53 211.1 190 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.5e-44 183.0 156 62.2
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 9.2e-39 164.5 89 92.1
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.6e-38 163.7 90 93.3
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.0e-37 161.0 167 56.3
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.2e-32 143.3 158 50.0
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.9e-32 142.1 99 72.7
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.3e-28 129.4 99 66.7
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-23 114.4 78 71.8
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.6e-22 109.0 78 67.9
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.0e-21 107.8 86 66.3
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 8.4e-16 88.2 82 56.1
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.5e-09 67.4 62 56.5
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 7.6e-09 65.1 62 53.2


User provided reference genes

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