Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 0.0e+00 1182.5 598 100.0
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.3e-204 716.1 626 61.8
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.9e-201 704.5 640 61.6
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 1.2e-197 693.7 613 60.4
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 3.1e-193 679.1 598 60.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.5e-192 676.8 600 58.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.0e-192 676.4 659 57.4
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.6e-192 676.0 600 60.2
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 2.9e-191 672.5 628 56.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.1e-186 656.4 665 56.7
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.8e-185 653.3 608 59.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 8.4e-183 644.4 645 57.1
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.0e-180 636.0 619 56.1
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 5.1e-180 635.2 600 55.8
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 6.7e-180 634.8 618 54.5
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.7e-179 631.7 621 56.2
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.1e-177 625.9 627 54.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 9.0e-177 624.4 636 55.2
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.6e-176 622.9 597 57.0
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.4e-174 617.1 617 54.9
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 5.1e-172 608.6 598 54.3
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 5.1e-172 608.6 606 54.3
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 4.8e-170 602.1 607 54.4
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.2e-170 601.3 637 54.9
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 8.5e-167 591.3 664 50.3
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-166 590.9 608 52.5
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.4e-166 590.5 651 52.4
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 7.2e-166 588.2 632 53.8
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.2e-165 587.4 599 54.4
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.6e-165 587.0 667 50.5
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.1e-165 586.6 641 52.0
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.7e-165 586.3 631 52.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 4.7e-165 585.5 613 54.2
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 1.1e-163 580.9 655 50.2
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.3e-163 579.3 545 57.4
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 5.7e-163 578.6 627 53.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.3e-162 577.4 596 54.4
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.3e-162 577.4 698 48.7
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.2e-162 576.6 607 52.2
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 2.0e-160 570.1 604 52.8
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.7e-159 567.0 604 49.8
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.9e-158 563.5 599 52.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.2e-158 561.6 618 50.3
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 6.1e-157 558.5 605 51.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-156 557.4 624 50.0
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 8.8e-156 554.7 662 51.5
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.1e-155 554.3 598 49.3
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.7e-155 551.2 600 48.7
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.7e-154 550.4 613 52.0
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.8e-154 548.9 605 48.4
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.8e-153 547.0 599 49.9
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 9.1e-153 544.7 599 50.6
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.0e-152 543.5 658 49.7
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.7e-152 543.1 611 50.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.5e-152 542.7 660 49.5
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 4.5e-152 542.3 604 48.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 5.9e-152 542.0 604 47.8
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 7.7e-152 541.6 603 49.1
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.7e-152 541.6 555 53.0
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 1.0e-151 541.2 585 49.2
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.7e-151 540.4 597 49.9
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.2e-151 540.0 590 50.0
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.2e-151 540.0 609 49.8
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.5e-150 537.3 599 50.1
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 4.2e-150 535.8 593 50.3
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.2e-150 535.8 590 49.8
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 9.4e-150 534.6 605 47.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.1e-149 533.5 533 52.5
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 3.6e-149 532.7 601 49.6
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.0e-148 531.2 617 50.2
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.4e-148 530.8 604 47.5
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 3.0e-148 529.6 619 49.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.6e-147 526.6 590 49.2
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.4e-147 526.2 606 49.7
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.4e-147 525.8 509 54.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 7.5e-147 525.0 604 49.0
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 4.8e-146 522.3 470 62.1
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.3e-146 521.9 601 47.9
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 8.3e-146 521.5 639 49.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.3e-146 521.5 639 49.6
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.1e-145 519.6 653 48.7
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 5.9e-144 515.4 596 47.7
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.0e-143 514.6 596 49.3
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.9e-142 510.4 524 51.3
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 9.5e-142 508.1 598 49.7
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 6.1e-141 505.4 590 49.0
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.0e-139 500.4 535 50.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 2.0e-139 500.4 526 51.5
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.3e-138 497.7 599 48.2
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.7e-138 497.3 464 54.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-137 492.3 596 47.7
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 8.6e-135 485.0 595 45.0
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 4.3e-134 482.6 595 44.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 2.8e-133 479.9 595 47.7
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 7.0e-129 465.3 506 52.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.6e-128 462.6 577 47.7
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.0e-127 461.5 534 48.3
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 6.8e-124 448.7 607 44.3
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.0e-123 447.2 588 44.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 5.4e-113 412.5 490 49.2
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 8.6e-111 405.2 598 40.1
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.5e-110 404.4 613 40.8
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.5e-110 404.4 623 40.9
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 3.3e-110 403.3 332 61.1
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 8.1e-109 398.7 545 44.4
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.0e-103 380.2 342 57.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 5.2e-100 369.4 379 53.6
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 6.4e-98 362.5 430 45.3
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.8e-96 355.5 728 35.0
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-92 345.1 391 49.6
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.4e-92 344.0 361 52.1
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.7e-90 337.8 453 40.6
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 5.1e-87 326.2 239 67.8
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 3.3e-86 323.6 458 39.5
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.0e-84 316.6 493 38.3
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 6.9e-84 315.8 268 61.6
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 1.0e-79 302.0 489 37.0
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 9.6e-78 295.4 333 52.6
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 9.6e-78 295.4 311 54.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.1e-76 290.4 304 53.6
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.9e-74 283.9 233 60.5
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.9e-74 283.1 254 58.3
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 1.9e-70 271.2 277 52.3
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 9.7e-70 268.9 284 50.4
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-67 261.9 230 61.7
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 4.5e-67 260.0 322 45.3
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.0e-66 258.8 337 43.6
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.4e-65 255.0 240 56.7
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 6.7e-63 246.1 232 51.7
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.9e-62 244.6 265 57.4
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 7.9e-56 222.6 158 65.8
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.7e-53 214.9 132 72.7
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 3.7e-53 213.8 386 42.0
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.2e-49 199.5 429 34.7
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.4e-49 199.1 183 58.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.0e-47 195.7 183 57.9
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.9e-47 193.7 165 60.6
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 8.8e-47 192.6 187 55.6
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 1.1e-46 192.2 241 51.5
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-46 190.3 183 56.3
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-46 190.3 183 56.3
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-46 190.3 183 56.3
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.7e-46 189.9 183 55.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 5.7e-46 189.9 186 55.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.3e-45 188.7 147 63.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.0e-44 183.0 225 47.6
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 5.3e-36 156.8 180 50.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.5e-35 153.7 162 57.4
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.3e-34 152.1 229 47.2
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 8.8e-31 139.4 128 55.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.5e-30 138.7 170 47.6
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.2e-29 134.8 186 42.5
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.5e-27 127.1 252 35.7
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 5.9e-27 126.7 667 21.4
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.0e-26 125.9 115 55.7
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-25 122.5 103 58.3
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 7.2e-25 119.8 103 57.3
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.2e-25 119.8 198 48.5
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 9.5e-25 119.4 97 58.8
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-22 111.7 86 58.1
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 7.5e-22 109.8 130 47.7
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.2e-21 108.2 167 40.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 2.9e-18 97.8 272 33.5
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.3e-17 94.0 69 58.0
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.1e-16 91.7 196 42.9
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.0e-15 87.8 83 53.0
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-14 85.9 79 54.4
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.6e-14 84.7 94 52.1
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 6.4e-13 80.1 115 48.7
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.4e-12 79.0 134 50.0
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 3.2e-12 77.8 159 42.8
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 5.4e-12 77.0 98 46.9
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 1.2e-11 75.9 102 48.0
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 8.6e-10 69.7 45 68.9
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 8.9e-07 59.7 45 60.0
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.5e-06 58.9 47 59.6
FAN15G1786 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.6e-06 58.2 34 67.6
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 9.8e-06 56.2 65 44.6


User provided reference genes

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