Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.2e-295 1019.2 590 100.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 1.4e-124 451.1 607 46.3
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.2e-118 429.9 595 45.0
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 5.7e-115 419.1 598 44.6
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 2.8e-114 416.8 593 44.0
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 2.9e-111 406.8 600 43.0
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.5e-110 404.4 595 43.7
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.2e-110 403.3 595 43.7
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 5.2e-108 396.0 621 42.4
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 6.7e-108 395.6 593 43.8
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.7e-106 389.8 599 41.7
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 4.8e-106 389.4 616 40.9
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.6e-104 384.4 624 40.2
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 5.0e-103 379.4 600 39.8
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.2e-101 374.8 607 40.4
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.0e-100 369.8 604 40.6
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.5e-99 367.9 575 40.9
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 9.8e-99 365.2 600 40.2
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.3e-98 364.8 602 38.9
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 8.3e-98 362.1 594 40.2
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.8e-97 360.9 598 38.5
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 7.0e-97 359.0 598 38.8
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 8.6e-95 352.1 383 52.7
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.9e-94 350.9 540 42.8
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 7.2e-94 349.0 593 40.3
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 9.5e-94 348.6 602 37.9
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 4.7e-93 346.3 607 36.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 8.0e-93 345.5 596 38.9
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 3.0e-92 343.6 615 37.2
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 5.2e-92 342.8 590 38.0
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 8.9e-92 342.0 638 36.4
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 8.9e-92 342.0 604 37.9
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 5.7e-91 339.3 609 36.9
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 1.3e-90 338.2 592 38.0
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 6.3e-90 335.9 593 37.3
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 6.3e-90 335.9 570 40.2
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 4.1e-89 333.2 601 38.1
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 7.0e-89 332.4 600 39.5
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 7.0e-89 332.4 603 37.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.5e-88 330.1 606 38.4
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 7.8e-88 328.9 557 36.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.0e-87 328.6 612 38.9
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.3e-87 328.2 592 38.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 6.6e-87 325.9 589 36.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.5e-86 323.9 606 36.8
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 4.3e-86 323.2 591 35.9
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.1e-85 320.9 594 36.7
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.8e-85 320.5 586 39.9
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.7e-85 319.7 586 39.9
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 8.0e-85 318.9 602 36.0
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.3e-84 317.4 612 35.8
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-83 314.3 605 36.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.6e-83 313.9 598 36.5
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 2.6e-83 313.9 608 36.0
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 8.3e-82 308.9 605 35.4
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.8e-81 307.8 620 34.4
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 5.4e-81 306.2 592 35.6
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 7.0e-81 305.8 595 35.5
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.2e-80 305.1 607 35.9
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 2.7e-80 303.9 590 34.1
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.7e-80 303.9 616 35.9
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.7e-80 303.9 590 35.8
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 6.0e-80 302.8 588 33.5
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 3.9e-79 300.1 601 35.1
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 6.6e-79 299.3 607 35.1
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-78 298.5 603 35.3
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.9e-78 297.7 594 34.5
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.5e-78 297.4 594 34.2
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.3e-78 296.6 601 34.9
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 4.3e-78 296.6 599 35.2
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 4.3e-78 296.6 599 35.2
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.2e-77 295.0 616 36.9
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 4.7e-77 293.1 606 34.8
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 6.2e-77 292.7 279 58.8
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.1e-76 292.0 617 34.4
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.8e-76 291.2 614 32.6
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.2e-75 288.5 600 36.2
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.3e-74 285.0 590 33.7
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.3e-74 285.0 600 35.7
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.2e-74 284.3 535 35.3
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.1e-73 282.0 600 35.2
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.2e-72 278.5 593 34.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.7e-71 274.6 645 33.0
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.9e-70 271.2 628 32.8
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 9.5e-70 268.9 600 32.8
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.3e-68 264.2 299 49.2
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 2.6e-67 260.8 378 42.6
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.3e-66 258.5 602 33.6
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.9e-66 257.3 595 33.4
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.0e-63 248.8 571 32.9
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 2.5e-62 244.2 320 45.0
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.2e-58 231.1 577 32.6
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 3.8e-58 230.3 577 32.4
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.9e-58 229.9 279 50.2
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.8e-53 214.2 328 42.7
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.1e-52 212.2 317 39.7
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 3.4e-43 180.6 313 36.7
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 5.4e-41 173.3 571 29.4
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.5e-40 170.6 578 29.1
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.8e-34 150.6 590 25.4
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.4e-34 149.8 221 43.9
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.2e-32 145.6 368 34.8
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 3.5e-32 144.1 223 41.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.3e-29 135.6 402 28.9
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 5.1e-23 113.6 303 28.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 3.3e-22 110.9 375 28.0
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 3.7e-21 107.5 251 31.1
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 3.1e-20 104.4 366 27.9
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 3.4e-19 100.9 349 28.4
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 8.5e-18 96.3 154 40.3
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 7.4e-14 83.2 95 45.3
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.8e-13 81.3 113 43.4
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.4e-12 78.2 93 45.2
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.7e-10 72.0 264 25.8
SGA_v2.0_scaffold45G17088 Striga asiatica HOM05D001172 ORTHO05D001128 6.7e-07 60.1 124 35.5
Nitab4.5_0000946g0050 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.8e-07 59.7 92 38.0


User provided reference genes

Program Settings