Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 3.2e-185 652.1 472 100.0
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.2e-96 355.5 460 66.5
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 3.4e-78 296.6 474 64.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 1.5e-73 281.2 463 61.1
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 1.3e-72 278.1 464 60.6
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.6e-72 277.7 472 54.2
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.6e-70 270.4 458 56.1
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.3e-69 268.1 466 60.9
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.7e-67 260.4 475 60.0
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 6.0e-67 259.2 478 59.2
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 3.9e-66 256.5 474 52.5
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.5e-65 254.6 468 59.8
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.5e-65 254.6 343 64.1
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.5e-65 254.6 477 51.6
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 4.3e-65 253.1 475 52.8
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 6.2e-64 249.2 475 52.6
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.8e-63 247.7 476 51.7
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 9.0e-63 245.4 475 52.2
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.3e-61 241.5 478 52.3
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.7e-61 241.1 444 50.2
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.7e-61 241.1 452 48.0
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 2.9e-61 240.4 473 57.3
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 1.9e-60 237.7 438 58.9
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 2.5e-60 237.3 452 44.5
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 3.2e-60 236.9 476 57.6
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 4.2e-60 236.5 461 44.5
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.2e-59 235.0 475 57.3
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 1.6e-59 234.6 477 57.7
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 7.9e-59 232.3 475 57.9
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.8e-58 231.1 464 53.7
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 5.1e-58 229.6 476 56.7
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 6.7e-58 229.2 468 57.3
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 2.5e-57 227.3 472 54.4
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-55 221.5 452 59.3
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 1.8e-55 221.1 463 48.6
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.2e-54 218.4 467 57.4
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 3.8e-53 213.4 465 56.3
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 1.1e-52 211.8 466 57.9
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 2.5e-52 210.7 466 57.1
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 9.4e-52 208.8 465 55.9
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 9.4e-52 208.8 367 65.4
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 2.1e-51 207.6 451 56.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 2.1e-51 207.6 464 56.0
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 2.1e-51 207.6 464 56.0
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.1e-51 207.6 450 57.6
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 6.1e-51 206.1 449 55.2
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 7.9e-51 205.7 451 57.4
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.4e-50 204.9 438 42.7
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 3.9e-50 203.4 456 47.6
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 1.5e-49 201.4 449 54.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.5e-49 201.4 342 55.6
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 2.5e-49 200.7 466 56.0
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.5e-49 200.7 350 55.7
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 9.7e-49 198.7 465 56.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 4.8e-48 196.4 462 56.3
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.1e-47 195.3 462 56.3
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 1.4e-47 194.9 437 57.0
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 5.3e-47 193.0 462 56.1
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 5.3e-47 193.0 467 56.1
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 6.9e-47 192.6 351 55.3
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 9.1e-47 192.2 481 54.1
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 3.4e-46 190.3 212 50.5
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 3.4e-46 190.3 473 49.0
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 7.9e-43 179.1 315 59.0
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 7.9e-43 179.1 457 31.9
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 6.7e-42 176.0 475 41.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 9.7e-41 172.2 444 54.1
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 1.3e-40 171.8 445 31.0
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.4e-39 168.3 458 52.6
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 4.1e-39 166.8 352 51.4
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.7e-37 161.4 341 51.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 8.0e-35 152.5 175 50.3
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 6.7e-34 149.4 207 45.4
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.8e-32 144.1 461 51.0
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 3.7e-32 143.7 346 49.7
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 7.0e-31 139.4 461 49.7
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.6e-30 138.3 465 36.3
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.6e-27 127.1 196 42.9
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.0e-21 109.0 142 41.5
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.8e-15 88.2 349 43.3
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 5.2e-10 70.1 68 51.5
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 9.2e-07 59.3 50 58.0


User provided reference genes

Program Settings