Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.6e-192 676.4 481 100.0
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 6.8e-82 308.9 450 63.6
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.8e-80 303.5 456 63.6
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.2e-78 298.1 453 62.5
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.7e-78 297.0 459 60.6
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 2.3e-77 293.9 461 64.2
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.9e-77 293.5 461 64.2
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.1e-75 287.3 463 60.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.0e-74 285.0 460 62.8
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.6e-73 280.4 443 67.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 7.5e-73 278.9 452 60.2
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.3e-72 278.1 418 68.2
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.2e-72 277.3 449 61.2
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 2.2e-72 277.3 457 65.0
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.9e-72 276.9 447 61.7
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.9e-72 276.9 447 61.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.7e-72 276.6 466 59.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.1e-71 275.0 446 61.4
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.4e-71 274.6 446 65.5
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.4e-71 274.6 433 65.8
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.8e-71 274.2 410 68.3
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.7e-70 270.4 455 65.5
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.7e-70 270.4 408 68.6
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.0e-69 268.5 447 59.7
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.3e-69 267.3 456 63.4
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.1e-68 265.0 454 59.0
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.6e-67 261.2 466 58.8
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.6e-67 261.2 448 60.5
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 3.1e-66 256.9 451 63.2
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.5e-65 254.6 458 62.7
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.6e-65 253.8 463 59.0
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 1.3e-64 251.5 440 59.1
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.3e-64 251.5 472 58.3
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 3.7e-64 250.0 443 59.1
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 6.4e-64 249.2 402 60.4
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 8.3e-64 248.8 424 65.1
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.4e-63 248.1 444 64.2
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 9.2e-63 245.4 459 61.2
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 2.0e-62 244.2 444 62.2
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 3.5e-62 243.4 460 62.6
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 3.5e-62 243.4 471 58.4
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 4.6e-62 243.0 450 60.7
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.0e-61 241.9 444 63.3
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.3e-61 240.7 443 59.6
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 3.0e-61 240.4 438 57.3
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.1e-60 238.4 403 59.3
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.9e-60 237.7 410 65.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 3.3e-60 236.9 392 67.1
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 7.3e-60 235.7 310 76.1
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.8e-59 233.8 435 62.5
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.8e-59 233.8 417 60.2
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 3.6e-59 233.4 437 62.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 4.7e-59 233.0 402 59.2
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 8.1e-59 232.3 389 67.1
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 8.1e-59 232.3 402 59.0
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.4e-58 231.5 463 61.6
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 2.3e-58 230.7 398 59.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 2.3e-58 230.7 445 58.7
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 4.0e-58 229.9 402 59.0
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 1.5e-57 228.0 284 51.4
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.5e-57 228.0 411 65.2
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.0e-57 227.6 466 55.4
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 2.6e-57 227.3 416 57.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 3.4e-57 226.9 441 56.0
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 3.4e-57 226.9 457 61.3
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 4.4e-57 226.5 406 59.9
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 4.9e-56 223.0 439 56.7
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 4.9e-56 223.0 402 64.4
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 5.4e-55 219.5 438 44.5
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 2.1e-54 217.6 417 57.8
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 3.5e-54 216.9 406 63.5
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.8e-54 215.7 411 58.9
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.0e-53 215.3 406 62.8
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.3e-53 214.9 419 56.8
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.3e-53 214.9 440 57.3
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.5e-52 211.5 444 57.0
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 2.3e-50 204.1 424 58.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 6.8e-50 202.6 356 64.3
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 1.5e-49 201.4 453 55.2
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 9.9e-49 198.7 258 77.5
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 1.7e-48 198.0 421 56.8
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 3.7e-48 196.8 485 53.0
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 8.4e-48 195.7 406 56.4
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 9.2e-47 192.2 344 62.8
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.6e-46 191.4 422 60.4
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 2.7e-46 190.7 448 54.5
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 4.6e-46 189.9 349 62.8
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 6.0e-46 189.5 446 51.3
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 7.8e-46 189.1 415 56.4
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 7.8e-46 189.1 417 59.2
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.0e-45 188.7 398 57.3
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.5e-44 184.1 389 60.4
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 4.4e-41 173.3 416 56.7
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.2e-40 171.0 411 57.7
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 4.9e-40 169.9 139 83.5
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.4e-39 168.3 264 53.0
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.5e-36 158.3 451 53.7
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.3e-35 155.2 236 78.8
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.4e-34 151.0 410 55.9
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 4.4e-33 146.7 267 38.6
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 8.4e-32 142.5 364 41.2
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.7e-30 137.5 267 64.8
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 8.1e-27 125.9 157 49.0
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.0e-26 123.6 454 29.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 3.4e-25 120.6 224 84.4
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 7.6e-25 119.4 218 77.5
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.1e-19 101.3 292 31.2
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 4.0e-18 97.1 218 78.0
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.1e-15 89.0 207 39.1
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.1e-14 84.7 427 45.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.5e-14 84.0 435 46.9
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.8e-13 81.6 84 45.2
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.0e-13 80.9 155 34.8
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.5e-12 78.6 306 59.5
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 3.7e-11 73.9 290 58.3
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 1.0e-08 65.9 103 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 5.5e-07 60.1 328 23.8


User provided reference genes

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