Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.8e-185 651.7 311 100.0
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.4e-159 565.1 311 83.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.2e-157 558.5 311 82.6
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 5.4e-157 557.8 311 83.0
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.6e-156 556.2 311 83.0
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.5e-156 555.1 311 82.6
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 3.5e-156 555.1 311 83.0
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-155 553.1 311 82.3
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-155 553.1 311 82.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.0e-155 552.0 311 82.0
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.0e-155 552.0 311 82.0
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.9e-155 551.6 310 81.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.1e-154 550.1 311 83.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.9e-154 549.3 311 80.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 5.6e-154 547.7 311 81.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-153 545.8 311 80.4
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.8e-152 542.7 311 80.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 4.0e-152 541.6 311 79.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 5.2e-152 541.2 311 79.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 6.8e-152 540.8 311 79.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.8e-152 540.8 313 80.8
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 8.9e-152 540.4 311 79.4
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-151 539.7 311 80.1
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.5e-151 539.7 311 80.1
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.4e-151 538.5 312 81.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.8e-151 537.7 311 80.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 9.9e-151 537.0 311 80.7
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.3e-150 536.6 312 80.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.7e-150 536.2 311 79.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.2e-150 535.8 311 78.8
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.2e-150 535.8 311 79.1
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.9e-150 535.4 312 80.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.8e-150 535.0 311 78.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.9e-150 534.6 311 80.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.4e-150 533.9 311 79.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 8.4e-150 533.9 311 78.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.1e-149 533.5 311 78.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.6e-148 529.6 311 78.1
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 4.6e-148 528.1 311 77.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.0e-148 527.7 311 79.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 7.8e-148 527.3 311 78.8
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.8e-148 527.3 344 72.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.0e-147 526.9 311 79.7
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.7e-147 526.2 311 79.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-147 526.2 311 79.1
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.3e-147 525.8 311 77.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.6e-147 524.2 311 78.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 6.6e-147 524.2 311 77.8
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.1e-146 523.5 312 77.6
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-146 523.5 311 78.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.5e-146 523.1 312 76.6
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-146 522.7 312 77.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.3e-146 521.9 311 78.5
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.3e-146 521.9 290 82.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 5.6e-146 521.2 311 76.8
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 7.3e-146 520.8 311 77.2
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 9.6e-146 520.4 311 75.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.2e-145 520.0 311 77.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.2e-145 520.0 311 78.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.1e-145 519.2 311 77.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.6e-145 518.5 311 77.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.7e-145 518.1 311 78.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 6.2e-145 517.7 312 79.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 6.2e-145 517.7 312 77.6
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-144 516.9 311 75.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-144 516.5 324 75.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.4e-144 516.5 335 72.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.4e-144 516.5 335 72.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.4e-144 515.8 292 81.2
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.1e-144 515.4 311 76.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.1e-144 515.4 311 76.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.0e-144 515.0 311 75.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 6.9e-144 514.2 311 74.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 9.0e-144 513.8 317 75.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.4e-143 511.5 311 74.6
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 5.8e-143 511.1 339 72.6
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.2e-142 509.2 311 74.9
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 2.2e-142 509.2 312 75.3
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.8e-142 508.4 311 74.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 4.9e-142 508.1 313 77.3
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.2e-141 505.4 311 74.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.2e-141 505.4 313 77.0
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 4.2e-141 505.0 303 78.2
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.6e-140 501.5 311 74.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.5e-138 496.5 311 74.9
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 4.3e-138 495.0 313 71.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.6e-138 494.6 312 76.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 6.9e-136 487.6 311 71.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 5.8e-135 484.6 315 70.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 9.9e-135 483.8 321 71.3
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.7e-134 483.0 312 71.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.8e-134 481.9 324 69.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 4.9e-134 481.5 312 72.8
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 8.4e-134 480.7 321 69.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-133 479.6 322 70.5
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.4e-133 479.2 321 70.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 7.1e-133 477.6 322 69.9
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.2e-132 476.9 321 69.2
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.7e-132 475.7 312 70.8
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 4.6e-132 474.9 322 69.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 4.6e-132 474.9 311 72.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 6.0e-132 474.6 322 69.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.0e-131 473.8 322 69.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.0e-131 473.8 312 72.1
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.3e-131 473.4 323 69.7
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.8e-131 473.0 330 67.3
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.7e-131 470.7 311 68.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.5e-130 469.9 311 67.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.6e-130 468.0 317 69.1
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 7.4e-130 467.6 315 70.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.5e-127 458.4 310 67.1
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.8e-126 455.3 311 68.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.6e-124 448.4 312 66.3
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-123 446.8 288 70.5
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-121 440.3 301 69.8
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 4.8e-121 438.3 311 67.5
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 4.5e-119 431.8 335 63.0
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-118 430.6 322 65.5
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.4e-117 426.8 246 80.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.9e-114 416.4 266 72.2
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.3e-114 415.2 239 80.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.0e-111 406.4 238 80.3
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.7e-106 387.5 312 60.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.8e-88 330.1 323 46.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.6e-87 327.0 314 49.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.1e-85 320.9 196 77.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 5.5e-85 318.5 317 48.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-81 306.6 333 51.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 3.5e-79 299.3 193 72.5
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 4.9e-73 278.9 166 80.1
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 9.8e-58 228.0 194 59.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 6.4e-57 225.3 249 49.8
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 8.1e-52 208.4 157 65.6
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.0e-51 206.1 122 73.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-49 201.1 129 66.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.3e-49 201.1 129 66.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-48 196.8 124 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.6e-47 194.1 189 48.1
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.8e-44 183.3 109 79.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-40 169.9 305 33.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-38 164.5 165 49.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.3e-37 159.8 106 64.2
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.8e-34 149.1 86 81.4
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.5e-29 133.7 69 82.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-27 127.5 76 72.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.8e-27 127.5 76 72.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.9e-26 121.7 102 59.8
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 5.4e-24 115.9 85 60.0
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 3.1e-19 100.1 71 63.4
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-18 98.2 73 63.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-17 94.0 72 65.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.8 59 62.7
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 3.9e-14 83.2 61 60.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-14 82.4 47 70.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 6.7e-14 82.4 47 70.2
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 7.1e-08 62.4 34 88.2


User provided reference genes

Program Settings