Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037696001 Vitis vinifera HOM05D001608 ORTHO05D014300 2.9e-29 131.3 72 100.0
Cfa020305 Carpinus fangiana HOM05D001608 ORTHO05D002070 4.3e-17 90.9 60 80.0
Carub.0003s2076 Capsella rubella HOM05D001608 ORTHO05D002070 7.4e-17 90.1 60 80.0
AL3G34720 Arabidopsis lyrata HOM05D001608 ORTHO05D002070 9.7e-17 89.7 60 78.3
AT3G20800 Arabidopsis thaliana HOM05D001608 ORTHO05D002070 1.3e-16 89.4 60 78.3
Dinv22245 Davidia involucrata HOM05D001608 ORTHO05D002070 1.6e-16 89.0 60 80.0
QL08p008729 Quercus lobata HOM05D001608 ORTHO05D014300 1.6e-16 89.0 60 78.3
QL09p024286 Quercus lobata HOM05D001608 ORTHO05D002070 1.6e-16 89.0 60 78.3
Manes.15G068100 Manihot esculenta HOM05D001608 ORTHO05D002070 2.8e-16 88.2 60 76.7
CiPaw.12G132100 Carya illinoinensis HOM05D001608 ORTHO05D002070 4.8e-16 87.4 60 76.7
Thecc.09G223800 Theobroma cacao HOM05D001608 ORTHO05D002070 4.8e-16 87.4 60 76.7
Ciclev10010530m.g Citrus clementina HOM05D001608 ORTHO05D002070 8.2e-16 86.7 62 77.4
Potri.011G086800 Populus trichocarpa HOM05D001608 ORTHO05D002070 1.1e-15 86.3 63 77.8
Duzib170G0224 Durio zibethinus HOM05D001608 ORTHO05D002070 1.4e-15 85.9 60 75.0
Actinidia35363 Actinidia chinensis HOM05D001608 ORTHO05D014300 1.8e-15 85.5 63 76.2
Prupe.1G349000 Prunus persica HOM05D001608 ORTHO05D002070 2.4e-15 85.1 60 75.0
Actinidia26615 Actinidia chinensis HOM05D001608 ORTHO05D014300 3.1e-15 84.7 62 75.8
MD13G1003400 Malus domestica HOM05D001608 ORTHO05D002070 3.1e-15 84.7 60 75.0
MD16G1004000 Malus domestica HOM05D001608 ORTHO05D002070 3.1e-15 84.7 60 73.3
Nn1g07232 Nelumbo nucifera HOM05D001608 ORTHO05D002070 4.1e-15 84.3 60 71.7
Manes.03G133200 Manihot esculenta HOM05D001608 ORTHO05D002070 5.3e-15 84.0 60 75.0
PGR031G1391 Punica granatum HOM05D001608 ORTHO05D002070 5.3e-15 84.0 65 78.5
Gohir.D13G219300 Gossypium hirsutum HOM05D001608 ORTHO05D002070 6.9e-15 83.6 58 74.1
Gorai.013G250200 Gossypium raimondii HOM05D001608 ORTHO05D002070 6.9e-15 83.6 58 74.1
CSS0031204 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 9.0e-15 83.2 60 75.0
ClCG09G010980 Citrullus lanatus HOM05D001608 ORTHO05D002070 9.0e-15 83.2 60 75.0
FAN12G2715 Fragaria x ananassa HOM05D001608 ORTHO05D002070 9.0e-15 83.2 60 73.3
Gohir.A13G215600 Gossypium hirsutum HOM05D001608 ORTHO05D002070 9.0e-15 83.2 58 74.1
MELO3C013140.2 Cucumis melo HOM05D001608 ORTHO05D002070 1.2e-14 82.8 60 75.0
CsaV3_7G022000 Cucumis sativus L. HOM05D001608 ORTHO05D002070 1.2e-14 82.8 60 75.0
Sed0022863 Sechium edule HOM05D001608 ORTHO05D002070 1.2e-14 82.8 60 73.3
Aa31LG8G7610 Aethionema arabicum HOM05D001608 ORTHO05D002070 1.5e-14 82.4 60 73.3
Cpa.g.sc84.105 Carica papaya HOM05D001608 ORTHO05D002070 1.5e-14 82.4 61 72.1
THA.LOC104817897 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 1.5e-14 82.4 60 76.7
Cc05_g14080 Coffea canephora HOM05D001608 ORTHO05D002070 2.0e-14 82.0 64 76.6
Sp3g18820 Schrenkiella parvula HOM05D001608 ORTHO05D002070 2.0e-14 82.0 60 75.0
Potri.001G359300 Populus trichocarpa HOM05D001608 ORTHO05D002070 2.6e-14 81.6 65 73.8
A05p27980 Brassica napus HOM05D001608 ORTHO05D002070 4.5e-14 80.9 60 76.7
BraA05t21681Z Brassica rapa HOM05D001608 ORTHO05D002070 4.5e-14 80.9 60 76.7
Thhalv10021160m.g Eutrema salsugineum HOM05D001608 ORTHO05D002070 4.5e-14 80.9 60 73.3
TAR626G1379 Trochodendron aralioides HOM05D001608 ORTHO05D002070 5.9e-14 80.5 60 73.3
BcaC09g49022 Brassica carinata HOM05D001608 ORTHO05D002070 7.7e-14 80.1 60 75.0
A01p34020 Brassica napus HOM05D001608 ORTHO05D002070 7.7e-14 80.1 60 75.0
C01p43420 Brassica napus HOM05D001608 ORTHO05D002070 7.7e-14 80.1 60 75.0
BraA01t03506Z Brassica rapa HOM05D001608 ORTHO05D002070 7.7e-14 80.1 60 75.0
FvH4_4g37120 Fragaria vesca HOM05D001608 ORTHO05D002070 7.7e-14 80.1 60 71.7
RcHm_v2.0_Chr4g0446921 Rosa chinensis HOM05D001608 ORTHO05D002070 1.0e-13 79.7 60 71.7
BcaB04g20627 Brassica carinata HOM05D001608 ORTHO05D002070 1.3e-13 79.3 60 75.0
BcaB06g26150 Brassica carinata HOM05D001608 ORTHO05D002070 1.3e-13 79.3 60 75.0
Gohir.A06G108700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 1.3e-13 79.3 63 68.3
Nn1g03451 Nelumbo nucifera HOM05D001608 ORTHO05D002070 1.3e-13 79.3 60 66.7
Sabra16G0237000 Salix brachista HOM05D001608 ORTHO05D002070 1.3e-13 79.3 65 72.3
FAN07G2124 Fragaria x ananassa HOM05D001608 ORTHO05D002070 2.9e-13 78.2 60 70.0
FAN17G1764 Fragaria x ananassa HOM05D001608 ORTHO05D002070 2.9e-13 78.2 60 70.0
BcaC05g28280 Brassica carinata HOM05D001608 ORTHO05D002070 3.8e-13 77.8 60 73.3
C05p43280 Brassica napus HOM05D001608 ORTHO05D002070 3.8e-13 77.8 60 73.3
BolC5t33060H Brassica oleracea HOM05D001608 ORTHO05D002070 3.8e-13 77.8 60 73.3
Gorai.010G128500 Gossypium raimondii HOM05D001608 ORTHO05D002070 3.8e-13 77.8 60 68.3
Eucgr.F00722 Eucalyptus grandis HOM05D001608 ORTHO05D002070 5.0e-13 77.4 61 70.5
CiPaw.11G192700 Carya illinoinensis HOM05D001608 ORTHO05D002070 1.1e-12 76.3 51 78.4
Nn6g35169 Nelumbo nucifera HOM05D001608 ORTHO05D002070 1.1e-12 76.3 60 65.0
CARHR096640 Cardamine hirsuta HOM05D001608 ORTHO05D002070 1.4e-12 75.9 61 68.9
Gohir.D06G112700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 1.4e-12 75.9 60 66.7
Ca_25811_v3 Cicer arietinum L. HOM05D001608 ORTHO05D002070 4.2e-12 74.3 65 67.7
MBI10_g29395_MAGBIO Magnolia biondii HOM05D001608 ORTHO05D002070 4.2e-12 74.3 60 70.0
TWI39G0872 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 5.5e-12 73.9 63 69.8
VMungo0540G2230 Vigna mungo HOM05D001608 ORTHO05D002070 5.5e-12 73.9 64 70.3
Glyma.08G319800 Glycine max HOM05D001608 ORTHO05D002070 7.2e-12 73.6 66 68.2
Actinidia32267 Actinidia chinensis HOM05D001608 ORTHO05D002070 9.4e-12 73.2 60 70.0
THA.LOC104816911 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 9.4e-12 73.2 60 66.7
Lalb_Chr15g0081501 Lupinus albus HOM05D001608 ORTHO05D002070 1.2e-11 72.8 71 64.8
vmacro02213 Vaccinium macrocarpon HOM05D001608 ORTHO05D002070 1.2e-11 72.8 62 71.0
Rhsim06G0220400 Rhododendron simsii HOM05D001608 ORTHO05D002070 2.1e-11 72.0 60 65.0
Sc16g0005850 Simmondsia chinensis HOM05D001608 ORTHO05D002070 2.1e-11 72.0 60 66.7
TAR624G0321 Trochodendron aralioides HOM05D001608 ORTHO05D002070 2.1e-11 72.0 60 70.0
Nitab4.5_0000168g0240 Nicotiana tabacum HOM05D001608 ORTHO05D002070 2.7e-11 71.6 60 66.7
Nitab4.5_0005265g0020 Nicotiana tabacum HOM05D001608 ORTHO05D014300 2.7e-11 71.6 61 65.6
TWI38G0984 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 2.7e-11 71.6 60 70.0
COL.COLO4_09899 Corchorus olitorius HOM05D001608 ORTHO05D002070 3.6e-11 71.2 51 72.5
CANSAT78G0203 Cannabis sativa HOM05D001608 ORTHO05D002070 4.6e-11 70.9 61 68.9
Phvul.006G046900 Phaseolus vulgaris HOM05D001608 ORTHO05D002070 4.6e-11 70.9 64 68.8
SHI26583 Sapria himalayana HOM05D001608 ORTHO05D002070 4.6e-11 70.9 60 60.0
TWI38G1473 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 6.1e-11 70.5 63 65.1
Prupe.4G219100 Prunus persica HOM05D001608 ORTHO05D002070 1.0e-10 69.7 51 74.5
Sabra11G0073200 Salix brachista HOM05D001608 ORTHO05D002070 2.3e-10 68.6 53 73.6
Sabra11G0078600 Salix brachista HOM05D001608 ORTHO05D002070 2.3e-10 68.6 53 73.6
TPR.G33747 Trifolium pratense HOM05D001608 ORTHO05D002070 2.3e-10 68.6 64 62.5
RhsimUnG0248500 Rhododendron simsii HOM05D001608 ORTHO05D002070 3.0e-10 68.2 60 63.3
TAR629G2112 Trochodendron aralioides HOM05D001608 ORTHO05D002070 3.0e-10 68.2 60 63.3
arahy.Tifrunner.gnm1.ann1.RCKD5T Arachis hypogaea HOM05D001608 ORTHO05D002070 3.9e-10 67.8 69 63.8
AUR62015827 Chenopodium quinoa HOM05D001608 ORTHO05D002070 3.9e-10 67.8 61 65.6
AUR62020391 Chenopodium quinoa HOM05D001608 ORTHO05D002070 3.9e-10 67.8 61 65.6
Lj8A171G40 Lonicera japonica HOM05D001608 ORTHO05D002070 5.1e-10 67.4 66 65.2
MD11G1212600 Malus domestica HOM05D001608 ORTHO05D002070 5.1e-10 67.4 55 65.5
MD03G1196300 Malus domestica HOM05D001608 ORTHO05D002070 6.7e-10 67.0 51 70.6
Nn2g13904 Nelumbo nucifera HOM05D001608 ORTHO05D002070 2.0e-09 65.5 57 61.4
PGR083G0879 Punica granatum HOM05D001608 ORTHO05D002070 2.0e-09 65.5 60 63.3
arahy.Tifrunner.gnm1.ann1.NRH3QV Arachis hypogaea HOM05D001608 ORTHO05D002070 2.5e-09 65.1 69 60.9
PGSC0003DMG400014419 Solanum tuberosum HOM05D001608 ORTHO05D002070 2.5e-09 65.1 63 65.1
THA.LOC104811126 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 5.7e-09 63.9 67 58.2
Nn2g11883 Nelumbo nucifera HOM05D001608 ORTHO05D014300 7.4e-09 63.5 54 61.1
HPP92_000964 Vanilla planifolia HOM05D001608 ORTHO05D002070 7.4e-09 63.5 61 63.9
Hund29390 Selenicereus undatus HOM05D001608 ORTHO05D002070 9.7e-09 63.2 62 64.5
Hund29391 Selenicereus undatus HOM05D001608 ORTHO05D002070 9.7e-09 63.2 62 64.5
CSS0005633 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 1.3e-08 62.8 51 68.6
Glyma.18G092700 Glycine max HOM05D001608 ORTHO05D002070 1.3e-08 62.8 66 60.6
Oeu008014.1 Olea europaea HOM05D001608 ORTHO05D002070 1.7e-08 62.4 64 64.1
Oeu026404.2 Olea europaea HOM05D001608 ORTHO05D002070 2.2e-08 62.0 64 64.1
Hma1.2p1_2862F.1_g329570 Hydrangea macrophylla HOM05D001608 ORTHO05D002070 2.8e-08 61.6 51 68.6
Atru.chr2.3496 Acer truncatum HOM05D001608 ORTHO05D002070 3.7e-08 61.2 69 56.5
Psat5g038800 Pisum sativum HOM05D001608 ORTHO05D002070 6.3e-08 60.5 65 56.9
SGA_v2.0_scaffold8G04343 Striga asiatica HOM05D001608 ORTHO05D002070 6.3e-08 60.5 61 63.9
CDE05G1164 Ceratophyllum demersum HOM05D001608 ORTHO05D002070 1.1e-07 59.7 60 56.7
FvH4_3g23230 Fragaria vesca HOM05D001608 ORTHO05D002070 1.1e-07 59.7 51 66.7
FAN11G0513 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.1e-07 59.7 51 66.7
FAN21G0147 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.1e-07 59.7 51 66.7
Phvul.008G269900 Phaseolus vulgaris HOM05D001608 ORTHO05D002070 1.4e-07 59.3 60 60.0
FAN25G1252 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.8e-07 58.9 51 62.7
FAN25G2099 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.8e-07 58.9 51 62.7
RcHm_v2.0_Chr5g0040921 Rosa chinensis HOM05D001608 ORTHO05D002070 1.8e-07 58.9 51 70.6
Sopen10g002180 Solanum pennellii HOM05D001608 ORTHO05D002070 1.8e-07 58.9 65 56.9
Glyma.02G293100 Glycine max HOM05D001608 ORTHO05D002070 2.4e-07 58.5 61 60.7
Zm00001eb070960 Zea mays HOM05D001608 ORTHO05D002070 2.4e-07 58.5 62 56.5
ATR0584G124 Amborella trichopoda HOM05D001608 ORTHO05D002070 4.1e-07 57.8 60 58.3
MSTRG.12987 Avicennia marina HOM05D001608 ORTHO05D002070 9.1e-07 56.6 61 59.0
SGA_v2.0_scaffold363G49947 Striga asiatica HOM05D001608 ORTHO05D002070 9.1e-07 56.6 61 55.7
Sopen10g002150 Solanum pennellii HOM05D001608 ORTHO05D002070 1.2e-06 56.2 62 51.6
Nitab4.5_0001393g0100 Nicotiana tabacum HOM05D001608 ORTHO05D002070 2.6e-06 55.1 63 57.1
Os07g0565200 Oryza sativa ssp. japonica HOM05D001608 ORTHO05D014300 3.4e-06 54.7 70 51.4
AL6G23570 Arabidopsis lyrata HOM05D001608 ORTHO05D002070 4.5e-06 54.3 61 59.0
AT5G12980 Arabidopsis thaliana HOM05D001608 ORTHO05D002070 4.5e-06 54.3 60 58.3
Solyc10g006220.4 Solanum lycopersicum HOM05D001608 ORTHO05D014300 4.5e-06 54.3 67 55.2


User provided reference genes

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