Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.9e-154 548.5 272 100.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.8e-109 399.1 279 73.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 3.2e-105 385.6 281 70.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.9e-103 378.6 279 71.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.0e-102 376.3 288 69.4
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.8e-101 372.5 317 64.4
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 6.3e-101 371.3 255 73.3
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.8e-100 369.8 279 70.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-98 364.0 281 66.9
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-98 364.0 281 66.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 8.5e-98 360.9 281 68.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 8.5e-98 360.9 287 66.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.0e-95 354.0 279 67.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.8e-95 353.2 283 65.0
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.3e-95 352.8 287 66.6
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.3e-95 352.8 329 59.6
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.0e-94 349.7 282 66.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.3e-93 347.1 286 65.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 8.2e-93 344.4 286 64.3
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.8e-92 343.2 286 64.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.0e-91 339.7 281 63.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.9e-91 338.2 377 52.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.0e-90 335.1 287 64.1
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.5e-90 334.3 281 65.8
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 9.4e-89 330.9 291 59.8
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.6e-88 330.1 287 60.3
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.0e-87 327.4 292 62.3
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.8e-87 324.3 282 60.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.1e-86 323.9 392 49.7
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.2e-85 319.7 288 61.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.8e-85 319.3 280 60.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.7e-85 318.9 284 62.3
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.7e-83 312.8 285 58.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.1e-80 303.1 277 58.1
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.7e-80 302.8 282 58.9
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.3e-79 299.7 282 58.5
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.3e-79 299.7 282 60.3
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.0e-79 298.9 283 58.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.4e-78 295.4 276 56.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 7.5e-78 294.7 255 61.6
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.7e-77 293.5 281 56.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.8e-76 290.0 258 60.1
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.1e-76 288.9 280 57.5
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 7.0e-76 288.1 258 60.9
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.6e-75 287.0 275 57.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.8e-74 282.3 282 57.1
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.0e-74 282.0 282 56.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 8.5e-74 281.2 282 56.7
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 8.5e-74 281.2 293 55.3
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-73 280.8 258 58.1
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.1e-73 280.8 262 59.5
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 9.4e-73 277.7 284 56.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.7e-72 275.4 204 70.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 4.0e-71 272.3 290 51.4
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-70 270.8 282 54.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.6e-70 269.6 226 62.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 5.7e-70 268.5 280 55.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.1e-68 262.3 300 50.0
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.2e-68 261.2 313 48.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.2e-68 261.2 313 48.9
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.2e-67 260.8 208 68.3
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 5.0e-66 255.4 275 57.8
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.1e-65 254.2 234 58.5
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.6e-64 250.4 287 51.6
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.7e-64 248.8 262 54.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-63 247.7 258 54.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.8e-63 246.9 234 57.3
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 5.2e-63 245.4 215 60.9
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 5.7e-62 241.9 202 62.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.2e-61 240.0 220 57.7
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.7e-61 239.2 292 47.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.7e-61 239.2 285 49.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.4e-60 235.3 284 48.2
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.0e-60 235.0 277 49.1
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.6e-59 232.3 319 47.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.0e-58 231.1 318 47.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.0e-58 228.8 213 58.2
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 5.6e-57 225.3 169 68.6
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 9.5e-57 224.6 279 48.7
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 9.5e-57 224.6 286 47.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.8e-56 223.0 284 46.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 6.8e-55 218.4 292 45.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.6e-54 216.5 290 47.2
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.8e-54 215.3 271 49.4
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 9.8e-54 214.5 291 47.1
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-53 214.2 291 46.4
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.3e-53 214.2 291 46.4
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.3e-53 214.2 296 45.3
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.2e-53 213.4 291 46.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 6.4e-53 211.8 374 39.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 2.4e-52 209.9 291 46.0
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.4e-52 208.8 226 53.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.7e-51 206.5 281 47.0
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.6e-51 205.7 296 43.9
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 7.8e-51 204.9 283 42.8
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 7.8e-51 204.9 268 47.4
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.0e-50 204.5 304 43.1
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.6e-48 197.2 228 50.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 3.6e-48 196.1 205 51.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 8.1e-48 194.9 304 42.4
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.3e-47 193.4 292 43.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 3.1e-47 193.0 299 42.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.2e-46 191.0 351 39.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.2e-46 191.0 281 43.1
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.4e-46 189.1 268 42.5
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.5e-46 188.3 311 38.9
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.7e-45 187.2 225 48.9
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.9e-45 186.4 294 42.2
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.2e-44 183.0 165 59.4
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-43 181.0 295 42.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 3.5e-43 179.5 248 44.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.6e-41 172.2 283 42.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.2e-40 171.0 297 39.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.2e-40 168.7 317 38.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 6.2e-40 168.7 178 55.1
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.8e-39 167.2 291 38.8
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.0e-39 166.0 279 39.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.0e-38 163.7 278 41.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 4.4e-38 162.5 251 41.8
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.8e-38 162.2 289 40.1
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.9e-37 159.1 161 56.5
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.1e-33 147.9 305 33.1
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.1e-33 147.9 144 54.9
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.3e-33 145.2 143 54.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.2e-32 144.4 289 35.6
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.6e-27 125.9 118 61.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.3e-25 119.4 295 34.2
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-24 116.7 210 38.1
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 6.2e-24 115.5 227 35.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-23 114.4 210 37.6
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.5e-22 110.9 83 67.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.5e-22 110.9 176 38.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 5.8e-22 109.0 313 31.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.8e-22 109.0 256 32.4
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.1e-20 104.8 210 34.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.6e-19 100.9 308 29.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 2.7e-19 100.1 253 31.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 7.9e-19 98.6 129 48.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 7.9e-19 98.6 170 37.1
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.1e-16 90.5 96 51.0
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 3.4e-14 83.2 80 51.2
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 5.8e-14 82.4 108 44.4
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.1e-09 68.2 69 50.7
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 4.3e-09 66.2 106 36.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.2e-08 62.4 98 38.8
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 1.1e-07 61.6 88 37.5


User provided reference genes

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