Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037334001 Vitis vinifera HOM05D003563 ORTHO05D015420 4.3e-65 251.1 124 100.0
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 6.7e-26 120.9 83 74.7
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 6.7e-26 120.9 83 74.7
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 6.7e-26 120.9 62 91.9
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 8.8e-26 120.6 62 91.9
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.1e-25 120.2 62 90.3
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 1.5e-25 119.8 62 90.3
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.5e-25 119.8 62 90.3
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 1.5e-25 119.8 62 90.3
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 1.5e-25 119.8 83 74.7
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 1.5e-25 119.8 62 90.3
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 1.5e-25 119.8 83 73.5
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 2.0e-25 119.4 62 90.3
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 2.0e-25 119.4 62 90.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 2.6e-25 119.0 83 73.5
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 2.6e-25 119.0 86 69.8
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 2.6e-25 119.0 62 90.3
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 2.6e-25 119.0 62 90.3
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 2.6e-25 119.0 62 90.3
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 3.3e-25 118.6 63 88.9
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 3.3e-25 118.6 62 90.3
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 3.3e-25 118.6 84 72.6
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 3.3e-25 118.6 62 90.3
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 3.3e-25 118.6 62 90.3
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 3.3e-25 118.6 62 90.3
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 90.3
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 4.4e-25 118.2 83 72.3
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 91.9
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 4.4e-25 118.2 62 88.7
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 5.7e-25 117.9 62 90.3
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 5.7e-25 117.9 62 88.7
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 7.5e-25 117.5 62 88.7
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 7.5e-25 117.5 62 87.1
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 7.5e-25 117.5 62 88.7
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 88.7
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 88.7
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 90.3
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 88.7
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 88.7
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 9.7e-25 117.1 62 88.7
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 1.3e-24 116.7 62 88.7
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 1.3e-24 116.7 62 88.7
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 1.7e-24 116.3 62 87.1
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.2e-24 115.9 90 67.8
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 2.2e-24 115.9 62 87.1
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 2.8e-24 115.5 62 87.1
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 2.8e-24 115.5 83 72.3
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 3.7e-24 115.2 62 88.7
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 3.7e-24 115.2 83 69.9
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 3.7e-24 115.2 62 85.5
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 4.8e-24 114.8 62 87.1
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 4.8e-24 114.8 62 88.7
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 4.8e-24 114.8 62 88.7
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 6.3e-24 114.4 62 87.1
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 8.2e-24 114.0 62 87.1
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 8.2e-24 114.0 62 87.1
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 1.1e-23 113.6 62 87.1
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-23 113.2 62 87.1
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-23 113.2 62 87.1
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.8e-23 112.8 62 83.9
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.4e-23 112.5 62 83.9
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 3.1e-23 112.1 62 85.5
PSO675G6005 Papaver somniferum HOM05D003563 ORTHO05D015420 4.1e-23 111.7 65 80.0
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 7.0e-23 110.9 105 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 9.1e-23 110.5 83 68.7
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 9.1e-23 110.5 106 60.4
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 1.2e-22 110.2 83 67.5
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.6e-22 109.8 62 82.3
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.0e-22 109.4 83 67.5
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 2.0e-22 109.4 71 77.5
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 3.5e-22 108.6 62 82.3
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 3.5e-22 108.6 72 76.4
PSO478G3448 Papaver somniferum HOM05D003563 ORTHO05D015420 4.5e-22 108.2 66 78.8
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 4.5e-22 108.2 62 82.3
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 7.7e-22 107.5 115 55.7
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 1.0e-21 107.1 62 77.4
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 1.7e-21 106.3 86 62.8
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.7e-21 106.3 62 79.0
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 3.8e-21 105.1 83 62.7
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 3.8e-21 105.1 85 63.5
PSO782G5532 Papaver somniferum HOM05D003563 ORTHO05D015420 5.0e-21 104.8 62 79.0
PSO210G3800 Papaver somniferum HOM05D003563 ORTHO05D015420 3.2e-20 102.1 63 76.2
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.0e-18 97.1 62 75.8
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 1.8e-18 96.3 62 72.6
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 5.7e-17 91.3 62 74.2
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 2.8e-16 89.0 50 82.0
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 2.8e-16 89.0 74 60.8
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 2.4e-15 85.9 50 80.0
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.4e-15 85.9 64 64.1
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 3.1e-15 85.5 44 88.6
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 3.1e-15 85.5 44 88.6
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 3.1e-15 85.5 50 80.0
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 4.1e-15 85.1 71 63.4
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 4.1e-15 85.1 71 63.4
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 5.4e-15 84.7 71 63.4
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 7.0e-15 84.3 50 78.0
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 9.1e-15 84.0 71 60.6
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 9.1e-15 84.0 50 78.0
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.2e-14 83.6 45 86.7
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 1.2e-14 83.6 42 90.5
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 2.0e-14 82.8 71 62.0
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 2.0e-14 82.8 71 60.6
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 2.7e-14 82.4 45 84.4
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.5e-14 82.0 50 78.0
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 4.5e-14 81.6 43 88.4
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 4.5e-14 81.6 44 84.1
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 7.7e-14 80.9 50 74.0
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 7.7e-14 80.9 57 71.9
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 7.7e-14 80.9 45 82.2
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 1.3e-13 80.1 41 87.8
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.7e-13 79.7 41 87.8
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.7e-13 79.7 41 87.8
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.7e-13 79.7 41 87.8
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.7e-13 79.7 41 87.8
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.7e-13 79.7 41 87.8
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.8e-13 78.6 74 54.1
BcaB07g31057 Brassica carinata HOM05D003563 ORTHO05D005325 8.5e-13 77.4 43 83.7
CSS0015322 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 3.2e-12 75.5 41 82.9
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 9.4e-12 73.9 95 47.4
Haze_26669 Corylus avellana HOM05D003563 ORTHO05D005325 4.7e-11 71.6 62 45.2
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 6.1e-11 71.2 61 57.4
CSS0012340 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 8.8e-10 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.7VBG8A Arachis hypogaea HOM05D003563 ORTHO05D015420 1.5e-09 66.6 38 81.6
arahy.Tifrunner.gnm1.ann1.GIX57Y Arachis hypogaea HOM05D003563 ORTHO05D015420 1.5e-09 66.6 38 81.6
CSS0026525 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 1.5e-09 66.6 41 73.2
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 3.4e-09 65.5 60 48.3
arahy.Tifrunner.gnm1.ann1.I4AQ4M Arachis hypogaea HOM05D003563 ORTHO05D015420 4.4e-09 65.1 38 76.3
VMungo0464G1852 Vigna mungo HOM05D003563 ORTHO05D005325 3.5e-06 55.5 35 74.3


User provided reference genes

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