Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 0.0e+00 1115.5 564 100.0
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.4e-187 659.4 737 51.0
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 3.5e-162 575.9 739 46.3
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.5e-160 570.5 733 46.7
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 2.5e-160 569.7 723 47.4
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.6e-159 567.0 731 48.2
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.8e-159 566.2 723 46.7
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 6.8e-158 561.6 723 46.6
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 6.8e-158 561.6 733 46.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 7.5e-157 558.1 733 45.2
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.3e-156 557.4 732 45.1
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.7e-156 557.0 733 46.4
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 3.0e-153 546.2 730 44.8
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 5.6e-152 542.0 733 45.0
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 8.9e-150 534.6 733 45.3
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.1e-147 527.7 737 42.5
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.2e-146 524.2 733 43.8
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.6e-141 506.5 547 52.5
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 2.2e-140 503.4 736 42.9
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.9e-140 502.3 567 48.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 3.2e-139 499.6 739 42.4
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.3e-137 493.4 732 40.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.9e-137 492.7 733 42.3
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 6.6e-137 491.9 723 42.0
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 4.3e-136 489.2 737 42.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.6e-136 488.8 734 40.7
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 6.2e-135 485.3 733 40.1
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.1e-134 484.6 734 41.7
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.4e-134 483.4 552 50.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 3.1e-134 483.0 736 41.3
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 6.8e-134 481.9 729 41.0
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.3e-132 477.6 580 47.8
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 2.2e-132 476.9 654 46.0
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 3.2e-131 473.0 657 43.8
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 4.2e-131 472.6 534 50.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 8.7e-129 464.9 730 38.8
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.3e-128 463.0 549 48.8
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 9.6e-128 461.5 492 52.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 4.0e-126 456.1 420 59.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.4e-123 446.8 471 51.4
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 4.2e-123 446.0 466 52.4
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 4.6e-122 442.6 475 52.2
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.5e-120 437.6 672 42.0
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.3e-120 436.4 823 35.5
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 5.6e-120 435.6 344 63.4
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.3e-119 434.5 479 49.9
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.6e-119 434.1 815 35.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.8e-118 430.6 449 51.7
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 5.3e-118 429.1 458 49.1
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.2e-117 427.9 474 50.8
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.7e-116 424.1 489 48.7
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.6e-114 416.0 481 47.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.8e-113 414.1 492 46.3
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.8e-113 414.1 461 50.5
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.3e-112 409.8 458 48.5
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 4.3e-112 409.5 450 49.6
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-111 407.9 472 48.5
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.4e-110 403.7 482 47.5
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 6.9e-110 402.1 464 48.1
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 6.9e-110 402.1 477 48.6
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.0e-109 400.6 464 47.8
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.4e-109 399.8 452 49.8
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 7.6e-109 398.7 471 47.6
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.3e-108 397.9 458 49.3
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 2.9e-108 396.7 453 48.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.9e-108 396.0 462 47.2
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.1e-107 394.8 730 37.4
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.4e-107 394.4 442 48.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.2e-106 391.3 462 47.2
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 3.5e-106 389.8 458 45.2
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 6.0e-106 389.0 458 45.4
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 6.0e-106 389.0 458 45.4
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 7.9e-106 388.7 457 47.0
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 6.7e-105 385.6 493 43.8
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 8.7e-105 385.2 469 46.9
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.5e-104 384.4 469 46.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.8e-103 380.2 468 45.7
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.4e-102 377.1 456 45.2
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.4e-102 377.1 484 44.8
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.1e-99 368.2 452 44.5
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.9e-99 367.5 459 44.2
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 9.3e-99 365.2 438 46.6
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.6e-98 364.4 452 45.6
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.1e-98 364.0 438 46.3
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 7.9e-98 362.1 384 52.6
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.3e-97 361.3 438 47.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.8e-97 360.9 460 45.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.9e-96 357.5 434 45.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 3.3e-96 356.7 438 46.6
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.2e-95 354.0 455 42.0
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.4e-94 351.3 461 42.1
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 2.0e-93 347.4 460 44.8
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 2.0e-93 347.4 460 44.8
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 5.7e-88 329.3 207 75.4
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 2.4e-86 323.9 516 39.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 2.0e-85 320.9 383 47.5
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 4.5e-85 319.7 208 69.2
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 2.2e-84 317.4 227 69.6
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.9e-83 314.3 581 35.3
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 2.1e-82 310.8 450 38.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.7e-82 310.5 210 71.4
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 7.9e-82 308.9 446 39.7
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.3e-79 301.6 452 38.1
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.2e-77 295.0 211 66.4
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 8.5e-76 288.9 360 47.8
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 4.7e-74 283.1 352 45.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 8.0e-74 282.3 592 33.8
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.8e-73 281.2 304 50.0
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-68 264.6 168 71.4
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.1e-62 245.4 192 60.9
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.4e-62 245.0 200 58.0
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 6.3e-55 219.5 429 31.7
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 6.6e-52 209.5 395 38.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.8e-49 201.4 362 37.6
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 5.0e-44 183.3 117 70.1
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.1e-41 174.1 132 65.2
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 6.8e-41 172.9 134 70.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 8.9e-41 172.6 614 27.0
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.6e-40 171.0 130 68.5
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.6e-29 135.2 123 55.3
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 3.1e-25 120.9 314 32.2
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-23 115.2 62 77.4
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.5e-19 101.3 95 52.6
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 7.8e-13 79.7 79 50.6
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.8e-10 71.2 200 34.5
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.4e-09 68.9 42 61.9


User provided reference genes

Program Settings